View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21440_low_31 (Length: 366)
Name: NF21440_low_31
Description: NF21440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21440_low_31 |
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Alignment Details
Target: chr7 (Bit Score: 279; Significance: 1e-156; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 41 - 359
Target Start/End: Original strand, 26206806 - 26207124
Alignment:
| Q |
41 |
aacttaggatatgccaattgccaaccatcaaatataaaaggaaaagaacaattagaggagacaaatgacctataaacttattccaatgaacttataatgc |
140 |
Q |
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| T |
26206806 |
aacttaggatatgccaattgccaaccatcaaatacaaaaggaaaagaacaattagaggagacaaatgacctataaacttattccaatgaactcataatgc |
26206905 |
T |
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| Q |
141 |
aaataaaagacaaaaacagaatcatctatacttgttcagaatacacgagaaagatgcgtgagaaagattacaaggtagagcttcaaattgtgtttacttg |
240 |
Q |
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| T |
26206906 |
aaataaaagacaaaaacaggatcatctatacttgttcagaatacacgagaaatatgcgtgagaaagattaaaaggtagagcttcaaattgtatttacttg |
26207005 |
T |
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| Q |
241 |
gaaagaaaagttgattaatatttctcatctcaacttgtgtcttaaacatggaaactcaaacccaacaactcaatgttacttttctaccacatctaactcc |
340 |
Q |
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| T |
26207006 |
gaaagaaaagttgagtaatatttctcatctcaacttgtgtcttaaacatggaaactcaaacccaacaactcaatgttacttttctaccatatccaactcc |
26207105 |
T |
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| Q |
341 |
tggtcatatgaaccctatg |
359 |
Q |
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||| ||||||||||||||| |
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| T |
26207106 |
tggccatatgaaccctatg |
26207124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 59 - 359
Target Start/End: Original strand, 26226364 - 26226659
Alignment:
| Q |
59 |
tgccaaccatcaaatataaaaggaaaagaacaattagaggagacaaatgacctataaacttattccaatgaacttataatgcaaataaaagacaaaaaca |
158 |
Q |
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| T |
26226364 |
tgccaaccagcaaatacaaaaggaaaagaacaagtagaggaaacaaatgacctaaagacttattccaatgatcttataatgcaaataaaagacaaaa-ca |
26226462 |
T |
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| Q |
159 |
gaatcatctatacttgttcagaatacacgagaaagatgcgtgagaaagattacaaggtagagcttcaaattgtgtttacttggaaagaaaagttgattaa |
258 |
Q |
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| T |
26226463 |
gaatcatctatacttgttcacgatgcatgagaaagatgcgttagaaagattaaaaggtagagcctcaaattgtgttt----ggtaagaaaagttgagtaa |
26226558 |
T |
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| Q |
259 |
tatttctcatctcaacttgtgtcttaaacatggaaactcaaacccaacaactcaatgttacttttctaccacatctaactcctggtcatatgaaccctat |
358 |
Q |
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| T |
26226559 |
tatttctcttctcaacttgttttataaacatagaaactcaaccccaacaactcaatgttacttttctaccacatgtaactcctggtcatatgaaccctat |
26226658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 261 - 359
Target Start/End: Original strand, 26259492 - 26259588
Alignment:
| Q |
261 |
tttctcatctcaacttgtgtcttaaacatggaaactcaaacccaacaactcaatgttacttttctaccacatctaactcctggtcatatgaaccctatg |
359 |
Q |
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|||||||||| ||||||| | |||| |||||| ||||| | ||| |||||||||||| ||||||||| ||||||||||||| ||||||||||||||| |
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| T |
26259492 |
tttctcatctaaacttgt--cataaaaatggaatctcaatctcaaaaactcaatgttatttttctaccttatctaactcctggccatatgaaccctatg |
26259588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 5 - 44
Target Start/End: Original strand, 26206710 - 26206749
Alignment:
| Q |
5 |
ttatcataaattgcataataaagtttgaaataataaaact |
44 |
Q |
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| T |
26206710 |
ttatcataaattgcataataaattttgaaatagtaaaact |
26206749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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