View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21440_low_36 (Length: 343)
Name: NF21440_low_36
Description: NF21440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21440_low_36 |
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Alignment Details
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 11 - 325
Target Start/End: Original strand, 26981004 - 26981319
Alignment:
| Q |
11 |
ttatactcagaagatgtaggccggtatgaggagcaaaagttgaagactgtatagttttggagctccattttaatattagttcagggnnnnnnntacacaa |
110 |
Q |
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| T |
26981004 |
ttatactcagaagatgtaggctggtatgaggagcaaaagttgaagactgtatagttttggagctccattttaatattagttcagggaaaaaaatacacaa |
26981103 |
T |
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| Q |
111 |
atagaagcatgttgtctgttgtttgcaaatctattagaatgtgttacaaaataggcattcatttcaaattactaccacttgcatttacaa-tacatttat |
209 |
Q |
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| T |
26981104 |
atagaagcatgttgtctgttgtttgcaaatctattagaatgtgttacaaaataggcattcatttcaaattactaccacctgcatttacaaatacatttat |
26981203 |
T |
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| Q |
210 |
tcaatgtagacacaattcagggcagagaagttactggtcctgacttgtattggaagccaagtagggaaatatgggatgtgatatggggaattgaacccac |
309 |
Q |
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| T |
26981204 |
tcaatgtagacacaattcagggcagagaagttactggtcctgacttgtattggaagccaagtagggaaatatgggatgtgatatggggaattgaacccac |
26981303 |
T |
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| Q |
310 |
caccctgaacagtgaa |
325 |
Q |
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| T |
26981304 |
caccctgaacagtgaa |
26981319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 81
Target Start/End: Complemental strand, 27000387 - 27000317
Alignment:
| Q |
11 |
ttatactcagaagatgtaggccggtatgaggagcaaaagttgaagactgtatagttttggagctccatttt |
81 |
Q |
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| T |
27000387 |
ttatactcggaagatataagccagtatgagctgcaaaagttgaagactgcatagtttaggagttccatttt |
27000317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 81
Target Start/End: Complemental strand, 26986181 - 26986143
Alignment:
| Q |
43 |
gcaaaagttgaagactgtatagttttggagctccatttt |
81 |
Q |
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| T |
26986181 |
gcaaaaattgaagactgcatagttttggagctccatttt |
26986143 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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