View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21440_low_39 (Length: 335)
Name: NF21440_low_39
Description: NF21440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21440_low_39 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 316; Significance: 1e-178; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 328
Target Start/End: Original strand, 6399462 - 6399789
Alignment:
| Q |
1 |
agaccatctccatcaccatcaacccctttcaccattttcttacaagcactaaggctacaactctctcctaacctcttaaatatttgagacaattcctcag |
100 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6399462 |
agaccatctccatcactatcaacccctttcaccattttcttacaagcactaaggctacaactctctcctaacctcttaaatatttgagacaattcctcag |
6399561 |
T |
|
| Q |
101 |
cactaattttcccatcaccatttatatcaaatacttgaaaagcactcttaatatcttcttcttttatcttactaccctctccattgaacatttccataaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
6399562 |
cactaattttcccatcaccatttatatcaaatacttgaaaagcactcttaatatcttcttcttttatcttactaccttctccattgaacatttccataaa |
6399661 |
T |
|
| Q |
201 |
ctctttaaagtctatgaagccatctttgtcagagtccattgctttaaatgctttcactgcatcattgtcacaaataatccccttatccaaagcttttgca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6399662 |
ctctttaaagtctatgaagccatctttgtcagagtccattgctttaaatgctttcactgcatcattgtcacaaataatccccttatccaaagcttttgca |
6399761 |
T |
|
| Q |
301 |
gctgctttatactcttccagaataatct |
328 |
Q |
| |
|
||||||||||||||||||||| |||||| |
|
|
| T |
6399762 |
gctgctttatactcttccagactaatct |
6399789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 328
Target Start/End: Complemental strand, 6413040 - 6412713
Alignment:
| Q |
1 |
agaccatctccatcaccatcaacccctttcaccattttcttacaagcactaaggctacaactctctcctaacctcttaaatatttgagacaattcctcag |
100 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6413040 |
agaccatctccatcactatcaacccctttcaccattttcttacaagcactaaggctacaactctctcctaacctcttaaatatttgagacaattcctcag |
6412941 |
T |
|
| Q |
101 |
cactaattttcccatcaccatttatatcaaatacttgaaaagcactcttaatatcttcttcttttatcttactaccctctccattgaacatttccataaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
6412940 |
cactaattttcccatcaccatttatatcaaatacttgaaaagcactcttaatatcttcttcttttatcttactaccttctccattgaacatttccataaa |
6412841 |
T |
|
| Q |
201 |
ctctttaaagtctatgaagccatctttgtcagagtccattgctttaaatgctttcactgcatcattgtcacaaataatccccttatccaaagcttttgca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6412840 |
ctctttaaagtctatgaagccatctttgtcagagtccattgctttaaatgctttcactgcatcattgtcacaaataatccccttatccaaagcttttgca |
6412741 |
T |
|
| Q |
301 |
gctgctttatactcttccagaataatct |
328 |
Q |
| |
|
||||||||||||||||||||| |||||| |
|
|
| T |
6412740 |
gctgctttatactcttccagactaatct |
6412713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 328
Target Start/End: Complemental strand, 6410294 - 6409970
Alignment:
| Q |
1 |
agaccatctccatcaccatcaacccctttcaccattttcttacaagcactaaggctacaactctctcctaacctcttaaatatttgagacaattcctcag |
100 |
Q |
| |
|
|||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6410294 |
agaccatctccatcaccatcgacacctttcaccattttcttacaagcactaaggctgcaactctctcctaacctcttaaatatttgagacaattcctcag |
6410195 |
T |
|
| Q |
101 |
cactaattttcccatcaccatttatatcaaatacttgaaaagcactcttaatatcttcttcttttatcttactaccctctccattgaacatttccataaa |
200 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||| | |||||||||||||||||||| || |
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|
| T |
6410194 |
cactgattttcccatctccatttatatcaaatacttgaaaagcactcttaatctcctcttcttttatcttattgttttctccattgaacatttccatgaa |
6410095 |
T |
|
| Q |
201 |
ctctttaaagtctatgaagccatctttgtcagagtccattgctttaaatgctttcactgcatcattgtcacaaataatccccttatccaaagcttttgca |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| || | ||||||||||||||||| ||||||| |
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|
| T |
6410094 |
ctctttaaagtctatgaagccatctttgtcagagtccatcacgttaaatgctttcactgcatcaggatccc---caatccccttatccaaagattttgca |
6409998 |
T |
|
| Q |
301 |
gctgctttatactcttccagaataatct |
328 |
Q |
| |
|
||||||||||||||||||||| |||||| |
|
|
| T |
6409997 |
gctgctttatactcttccagactaatct |
6409970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 178 - 319
Target Start/End: Original strand, 6405258 - 6405396
Alignment:
| Q |
178 |
tctccattgaacatttccataaactctttaaagtctatgaagccatctttgtcagagtccattgctttaaatgctttcactgcatcattgtcacaaataa |
277 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||| |||||||||||| ||||||| || ||||||||||||||||||||| | || | | |
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|
| T |
6405258 |
tctccattgaacatttccataaactctctaaagtctatgaatccatctttgtcatagtccatggccttaaatgctttcactgcatcagtatccc---cta |
6405354 |
T |
|
| Q |
278 |
tccccttatccaaagcttttgcagctgctttatactcttcca |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6405355 |
cccccttatccaaagcttttgcagctgctttatactcttcca |
6405396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 48 - 111
Target Start/End: Original strand, 6403009 - 6403072
Alignment:
| Q |
48 |
actaaggctacaactctctcctaacctcttaaatatttgagacaattcctcagcactaattttc |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
6403009 |
actaaggctacaactctctcctaacctcttaaatatttgagacaattcatcagcactaattttc |
6403072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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