View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21440_low_4 (Length: 532)
Name: NF21440_low_4
Description: NF21440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21440_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 473; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 18 - 522
Target Start/End: Original strand, 31727162 - 31727666
Alignment:
| Q |
18 |
tatatttccttgaaagttgaaacatcatcattcattaaaaatccttggagtaattagtttttctgatactacgtagcacgacacttctgatagaagacgt |
117 |
Q |
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| T |
31727162 |
tatatttccttgaaagttgaaacatcatcattcattaaaaatccttggagtaattagtttttctgataccacgtagcacgacacttctgatagaagacgt |
31727261 |
T |
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| Q |
118 |
gttcgatgtctgacgcatccaaatgtgcaagtgtccgacaatggcttgacaccgacacgtgattacattaagtttctagagttattattagtctcgacat |
217 |
Q |
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| T |
31727262 |
gttcgatgtttgacgcatccaaatgtgcaagtgtccgacaatggcttgacaccgacatgtgattacattaagtttctagagttattattagtctcgacat |
31727361 |
T |
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| Q |
218 |
atcagtgttgtgtttaatgtctgtatctttatgagtgattcgtaatttgatataaacatatgtctctctcggcctctatcaagaaaattggtttgggtga |
317 |
Q |
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| T |
31727362 |
atcagtgttgtatttggtgtctgtatctttatgagtgattcgtaatttgatataaacatatgtctctctcggtctctatcaagaaaattggtttgggtga |
31727461 |
T |
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| Q |
318 |
gagaagaagattcaacaaagaattatcagctgtttaaactctaaacatccaatgattatcttaattttgtggtgtagagtgaatctaaacataatatcca |
417 |
Q |
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| T |
31727462 |
gagaagaagattcaacaaagaattatcagctgtttaaactctaaacatccaatgattatcttaattttgtggtgtagagtgaatctaaacataatatcca |
31727561 |
T |
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| Q |
418 |
agtctattatactgtagtgtattgtgaatgtattgtgaccctaccgtaatattcaagtctatgatttgtccaatcttgtgatgtttctgcaacagttgac |
517 |
Q |
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| T |
31727562 |
agtctattatactgtagtctattgtgaatgtattgtgaccctaccgtaatattcaagtctatgatttgtccaatcttgtgatgtttctgcaacagttgac |
31727661 |
T |
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| Q |
518 |
ttcat |
522 |
Q |
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| T |
31727662 |
ttcat |
31727666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 346 - 424
Target Start/End: Original strand, 31720380 - 31720457
Alignment:
| Q |
346 |
gctgtttaaactctaaacatccaatgattatcttaattttgtggtgtagagtgaatctaaacataatatccaagtctat |
424 |
Q |
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| T |
31720380 |
gctgtttaaactctaaatttccaatgatatttttaattttgtggtgtagtatgaacct-atcataaaatccaagtctat |
31720457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 346 - 423
Target Start/End: Original strand, 31714541 - 31714617
Alignment:
| Q |
346 |
gctgtttaaactctaaacatccaatgattatcttaattttgtggtgtagagtgaatctaaacataatatccaagtcta |
423 |
Q |
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| T |
31714541 |
gctgtttaaactctaaatttccattgatatttttaattttgtggtgtagtatgaacct-atcataatatccaagtcta |
31714617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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