View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21440_low_41 (Length: 329)
Name: NF21440_low_41
Description: NF21440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21440_low_41 |
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Alignment Details
Target: chr6 (Bit Score: 145; Significance: 3e-76; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 139 - 311
Target Start/End: Complemental strand, 20461357 - 20461185
Alignment:
| Q |
139 |
tttgtggacacctgaagagataagagaaagtgatttgaaaaatatgatagactgacaatttatagtaacataaaagagatagataaaatacggtgttaaa |
238 |
Q |
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| T |
20461357 |
tttgtggatacctgaagagataagagaaagtgatttgaaaaatatgataaactgacgatttatactaacataaaagagatagataaaataaggtgttgaa |
20461258 |
T |
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| Q |
239 |
tcagtgtttgaaaatttatattgtttaaatatcattgttgaatatttaaataaaacatgaaccatgtcttaca |
311 |
Q |
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| T |
20461257 |
ccagtgtttgaaaatttatattgtttaaatatcattgttgaatatttaaataaaacatgaaccatgtcttaca |
20461185 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 20461747 - 20461701
Alignment:
| Q |
1 |
atcatagacaaaagacaaatagtcatatatttgcaaggtctgaaaac |
47 |
Q |
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| T |
20461747 |
atcatagacaaaagacaaatagtcatatatttgcaaggtctgaaaac |
20461701 |
T |
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