View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21440_low_42 (Length: 329)
Name: NF21440_low_42
Description: NF21440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21440_low_42 |
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Alignment Details
Target: chr5 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 3111719 - 3111407
Alignment:
| Q |
1 |
aaatgttgatttggcagttcaaaacaatgcaaatgatgtatggaacaatttacaaggcattagaggaggctggacttgaaaatgagtatgaaccacaaga |
100 |
Q |
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| T |
3111719 |
aaatgttgatttggcagttcaaaacaatgcaaatgatgtatggaacaatttacaaggcattagaggaggctggacttgcaaatgagtatgaaccacaaga |
3111620 |
T |
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| Q |
101 |
ctacttgaatttcttttgccttggaaatcgcgagctcgccgaagatgaaaacatttcaaatgttgtaaaacctacaggacaaaacaatcctcaggtattt |
200 |
Q |
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| T |
3111619 |
ctacttgaatttcttttgccttggcaatcgcgagctcgccgaagatgaaaacatttcaaatgttgtaaaacctacaggacaaaacaatcctcaggtattt |
3111520 |
T |
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| Q |
201 |
tgtttttactctctttaagtaaacttgaannnnnnngcctatcaagttagttctatcataattgtttgcatattttggaacctataggtacacactcaaa |
300 |
Q |
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| T |
3111519 |
t-attttactctctttaagtaaacttgaatttttttgcctatcaagttagttctatcataattgtttgcatattttggaacctataggtactcactcaaa |
3111421 |
T |
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| Q |
301 |
agaacagaagattc |
314 |
Q |
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|||||||||||||| |
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| T |
3111420 |
agaacagaagattc |
3111407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 15 - 215
Target Start/End: Complemental strand, 3118207 - 3118007
Alignment:
| Q |
15 |
cagttcaaaacaatgcaaatgatgtatggaacaatttacaaggcattagaggaggctggacttgaaaatgagtatgaaccacaagactacttgaatttct |
114 |
Q |
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| T |
3118207 |
cagttcaagacaatgcaaatgatgtatggaacaatttacaaggcattagaggaggctggacttgaaaatgagtatgaaccacaggattacttgaatttct |
3118108 |
T |
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| Q |
115 |
tttgccttggaaatcgcgagctcgccgaagatgaaaacatttcaaatgttgtaaaacctacaggacaaaacaatcctcaggtattttgtttttactctct |
214 |
Q |
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| T |
3118107 |
tttgccttggcaatcgcgagctttcagataatgaaaatatttcaaatggtgtaaaatctaatggaaaaaacactcctcaggtattttgtttttaatctct |
3118008 |
T |
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| Q |
215 |
t |
215 |
Q |
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| |
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| T |
3118007 |
t |
3118007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 12691420 - 12691380
Alignment:
| Q |
21 |
aaaacaatgcaaatgatgtatggaacaatttacaaggcatt |
61 |
Q |
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| T |
12691420 |
aaaacaatgcaaatgatgtatgagacagtttacaaggcatt |
12691380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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