View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21440_low_47 (Length: 312)
Name: NF21440_low_47
Description: NF21440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21440_low_47 |
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Alignment Details
Target: chr2 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 296
Target Start/End: Complemental strand, 16699765 - 16699465
Alignment:
| Q |
1 |
gttgtagctaggtacctaggagccactcttgtgcttcctgacatcaagaatagcaaatcaggaaatagcatgtgtgtgctctatatcacatgataagttt |
100 |
Q |
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| T |
16699765 |
gttgtagctaggtacctaggagccactcttgtgcttcctgacatcaagaatagcaaatcaggaaatagcatgtgtgtgctctatatcacatgataagttt |
16699666 |
T |
|
| Q |
101 |
ttgattgatatcatttcaatttttattaatttgtttagtaaccaagaattttaatttatgaatatatgatacgactcatacatagtagatatgcttaaat |
200 |
Q |
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| T |
16699665 |
ttgattgatatcatttcaatttttattaatttgtttagtaaccaagaattttaatttatgaatatatgatacgactcatacatagtagatatgcttaaat |
16699566 |
T |
|
| Q |
201 |
gccacatataccctcca-----nnnnnnnnctatattttacaaaataaaagaaaggtaagtgtaatttagtaaagattaatgtttacatatttgatttca |
295 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16699565 |
gccacatataccctccatttttttttctttctatattttacaaaataaaagaaaggtaagtgtaatttagtaaagattaatgtttacatatttgatttca |
16699466 |
T |
|
| Q |
296 |
t |
296 |
Q |
| |
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| |
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| T |
16699465 |
t |
16699465 |
T |
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