View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21440_low_51 (Length: 299)
Name: NF21440_low_51
Description: NF21440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21440_low_51 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 106; Significance: 5e-53; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 174 - 299
Target Start/End: Original strand, 22042541 - 22042666
Alignment:
| Q |
174 |
ctgatgttgaaatgtttgatactgaatgatgtcttgccatctggtaatgtatttatgtcttcaaaaacactaaacaagtgtttgtgttcatactcctagc |
273 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||| |||||||||||| ||||||||||||||||| |||||||||||||||| |||||||| |
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| T |
22042541 |
ctgatgttgaaatgtttgattctgaatgatgtcttgccatctgctaatgtatttatatcttcaaaaacactaaagaagtgtttgtgttcatgctcctagc |
22042640 |
T |
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| Q |
274 |
ttactagaactcttggagagcattac |
299 |
Q |
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| T |
22042641 |
ttactagaactcttggagagcattac |
22042666 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 32 - 175
Target Start/End: Original strand, 22041985 - 22042126
Alignment:
| Q |
32 |
tactgaaactcatagagcattaatttgattcctccaggatattgttgtatgtatgaacctgtcaaaacagaaaacacgtgatatcattgtgaatttgttc |
131 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |||| ||||||| |||||| |
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| T |
22041985 |
tactgaaactca--gagcattaatttgattcctccaggatattgttgtatgtatgaacctgtcaaaatagaaaacacagggtatcgttgtgaaattgttc |
22042082 |
T |
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| Q |
132 |
acggtgccaaaaattgacgcaccagtctcgttttcaattctact |
175 |
Q |
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| T |
22042083 |
acggtgccaaaaattgacgcaccagtctcatttacaattttact |
22042126 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 174 - 266
Target Start/End: Complemental strand, 22016574 - 22016482
Alignment:
| Q |
174 |
ctgatgttgaaatgtttgatactgaatgatgtcttgccatctggtaatgtatttatgtcttcaaaaacactaaacaagtgtttgtgttcatac |
266 |
Q |
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|||||||||||||| ||| | | ||||||||||||| ||||| |||| |||||| ||||||||||||||||| ||| ||||||||||||| |
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| T |
22016574 |
ctgatgttgaaatggttgcttcagaatgatgtcttggcatctactaataaatttatatcttcaaaaacactaaagaagcatttgtgttcatac |
22016482 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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