View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21440_low_53 (Length: 295)
Name: NF21440_low_53
Description: NF21440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21440_low_53 |
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Alignment Details
Target: chr3 (Bit Score: 151; Significance: 6e-80; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 97 - 279
Target Start/End: Original strand, 45906743 - 45906928
Alignment:
| Q |
97 |
actcaactattga-catgcacttccaacaattttatagctaaagtcgttagaaaaacttgtttagtgtcatataagaaaatagttattgttagcattgag |
195 |
Q |
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| T |
45906743 |
actcaactattgatcatgcacttccaacaattttatagctaaagtcgttagaaaaacttgtttagtgtcatataagaaaatagttactgttagcattgag |
45906842 |
T |
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| Q |
196 |
ggtttattttaacgtt--agattattttgattaataaaatacataattataaactattttgatatattgaaggactattaagatta |
279 |
Q |
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| T |
45906843 |
ggtttattttaacgttagagattattttgactaataaaatacacaattataaactattttgatatattgaaagactattaagatta |
45906928 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 43061927 - 43061999
Alignment:
| Q |
18 |
ctggccgggcctgggtgcgtcatccttgaaaatgaattaagtaaaccaattagacaccgccaaatgaaatata |
90 |
Q |
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| T |
43061927 |
ctggccgggcctgggtgcatcatccttgaaaaataattaaataaaccgattagacaccaccaaataaaatata |
43061999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 83 - 139
Target Start/End: Original strand, 43062015 - 43062072
Alignment:
| Q |
83 |
gaaatatagaagaaactcaactattga-catgcacttccaacaattttatagctaaag |
139 |
Q |
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| T |
43062015 |
gaaatatagaagaaactcaactactgataaagcacttccaacaatttcatagctaaag |
43062072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 206
Target Start/End: Complemental strand, 18903096 - 18903056
Alignment:
| Q |
166 |
tataagaaaatagttattgttagcattgagggtttatttta |
206 |
Q |
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| T |
18903096 |
tataagaaaatagttactgtcagcattgagggattatttta |
18903056 |
T |
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