View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21440_low_54 (Length: 281)
Name: NF21440_low_54
Description: NF21440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21440_low_54 |
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Alignment Details
Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 19 - 260
Target Start/End: Complemental strand, 6359901 - 6359660
Alignment:
| Q |
19 |
aagaaaacaggggaagaacacgtagaacgagtggttgagacagcgtatttatgttcaccataagaagaagggtaattgaagagagaattgagaatgggat |
118 |
Q |
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| T |
6359901 |
aagaaaacaggggaagaacacgtagaacgagtggttgagacagcgtatttatgttcaccataagaagaagggtaattgaagagagaattgagaatgggat |
6359802 |
T |
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| Q |
119 |
ctgaaggggatgatctgaagaagcatttggattgggagagggtggtgtaaagagcaagaaaaagagtggtgaagagatagaaaagtgaaaaacagaggag |
218 |
Q |
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| T |
6359801 |
ctgaaggggatgatctgaagaagcatttggattgggagagggtggtgtaaagagcaagaaaaagagtggtgaagagatagaaaagtgaaaaacagaggag |
6359702 |
T |
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| Q |
219 |
ttttgatttgagaatgagaggtttggaagttgttattagctt |
260 |
Q |
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| T |
6359701 |
ttttgatttgagaatgagaggtttggaagttgttattagctt |
6359660 |
T |
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