View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21440_low_56 (Length: 275)

Name: NF21440_low_56
Description: NF21440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21440_low_56
NF21440_low_56
[»] chr3 (3 HSPs)
chr3 (206-259)||(27027922-27027975)
chr3 (206-259)||(27039513-27039566)
chr3 (221-258)||(3152732-3152769)
[»] chr2 (2 HSPs)
chr2 (205-258)||(8774240-8774294)
chr2 (205-258)||(8789341-8789395)
[»] chr4 (4 HSPs)
chr4 (206-258)||(53814413-53814466)
chr4 (204-247)||(38692576-38692620)
chr4 (206-253)||(54042098-54042146)
chr4 (206-249)||(55126692-55126736)
[»] chr7 (3 HSPs)
chr7 (205-258)||(13405036-13405090)
chr7 (206-258)||(40207299-40207352)
chr7 (206-257)||(37815913-37815965)
[»] chr8 (2 HSPs)
chr8 (206-258)||(41415019-41415072)
chr8 (225-258)||(45358800-45358833)
[»] chr1 (2 HSPs)
chr1 (221-258)||(31699216-31699253)
chr1 (205-256)||(45749410-45749462)
[»] chr6 (1 HSPs)
chr6 (206-253)||(24163625-24163673)
[»] chr5 (1 HSPs)
chr5 (206-258)||(34445941-34445993)


Alignment Details
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 206 - 259
Target Start/End: Complemental strand, 27027975 - 27027922
Alignment:
Q  206 tactccatccgttttaaatgaatgttgttttaaccaattgcacacatattaagt 259  Q
    |||||||||||||| |||| | ||| ||||||||||||||||||||||||||||    
T  27027975 tactccatccgtttcaaataagtgtcgttttaaccaattgcacacatattaagt 27027922  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 206 - 259
Target Start/End: Complemental strand, 27039566 - 27039513
Alignment:
Q  206 tactccatccgttttaaatgaatgttgttttaaccaattgcacacatattaagt 259  Q
    |||||||||||||| |||||  ||| ||||||||||||||||||||||||||||    
T  27039566 tactccatccgtttcaaatgggtgtcgttttaaccaattgcacacatattaagt 27039513  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 221 - 258
Target Start/End: Original strand, 3152732 - 3152769
Alignment:
Q  221 aaatgaatgttgttttaaccaattgcacacatattaag 258  Q
    |||||| ||| |||||||||||||||||||||||||||    
T  3152732 aaatgagtgtcgttttaaccaattgcacacatattaag 3152769  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 205 - 258
Target Start/End: Complemental strand, 8774294 - 8774240
Alignment:
Q  205 ttactccatccgttttaaa-tgaatgttgttttaaccaattgcacacatattaag 258  Q
    ||||||||||||||||||| ||| ||||||||||  |||||||||||||||||||    
T  8774294 ttactccatccgttttaaaatgagtgttgttttagtcaattgcacacatattaag 8774240  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 258
Target Start/End: Original strand, 8789341 - 8789395
Alignment:
Q  205 ttactccatccgttttaaa-tgaatgttgttttaaccaattgcacacatattaag 258  Q
    ||||||||||||||| ||| ||| ||||||||||  |||||||||||||||||||    
T  8789341 ttactccatccgtttaaaaatgagtgttgttttagacaattgcacacatattaag 8789395  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 206 - 258
Target Start/End: Original strand, 53814413 - 53814466
Alignment:
Q  206 tactccatccgttttaaa-tgaatgttgttttaaccaattgcacacatattaag 258  Q
    |||||||||||||||||| ||| ||| |||||||||||| ||||||||||||||    
T  53814413 tactccatccgttttaaaatgagtgtcgttttaaccaatcgcacacatattaag 53814466  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 247
Target Start/End: Complemental strand, 38692620 - 38692576
Alignment:
Q  204 cttactccatccgttttaaa-tgaatgttgttttaaccaattgca 247  Q
    |||||||| ||||||||||| |||||||||||||| |||||||||    
T  38692620 cttactccttccgttttaaagtgaatgttgttttagccaattgca 38692576  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 253
Target Start/End: Original strand, 54042098 - 54042146
Alignment:
Q  206 tactccatccgttttaaa-tgaatgttgttttaaccaattgcacacata 253  Q
    |||||||||||||||||| ||| ||| |||||| |||||||||||||||    
T  54042098 tactccatccgttttaaaatgagtgtcgttttagccaattgcacacata 54042146  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 249
Target Start/End: Complemental strand, 55126736 - 55126692
Alignment:
Q  206 tactccatccgttttaaa-tgaatgttgttttaaccaattgcaca 249  Q
    |||||||||||||||||| ||||||| |||||| |||||||||||    
T  55126736 tactccatccgttttaaaatgaatgtcgttttagccaattgcaca 55126692  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 258
Target Start/End: Original strand, 13405036 - 13405090
Alignment:
Q  205 ttactccatccgttttaaa-tgaatgttgttttaaccaattgcacacatattaag 258  Q
    ||||||| || |||||||| ||| ||| |||||||||||||||||||||||||||    
T  13405036 ttactccttctgttttaaaatgagtgtcgttttaaccaattgcacacatattaag 13405090  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 206 - 258
Target Start/End: Original strand, 40207299 - 40207352
Alignment:
Q  206 tactccatccgttttaaa-tgaatgttgttttaaccaattgcacacatattaag 258  Q
    |||||||||||||| ||| ||| ||||| |||| ||||||||||||||||||||    
T  40207299 tactccatccgtttcaaaatgagtgttgctttagccaattgcacacatattaag 40207352  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 257
Target Start/End: Complemental strand, 37815965 - 37815913
Alignment:
Q  206 tactccatccgttttaaa-tgaatgttgttttaaccaattgcacacatattaa 257  Q
    |||||| ||||||||||| ||| ||| |||||| |||||||||||||||||||    
T  37815965 tactccctccgttttaaaatgagtgtcgttttagccaattgcacacatattaa 37815913  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 206 - 258
Target Start/End: Complemental strand, 41415072 - 41415019
Alignment:
Q  206 tactccatccgttttaaa-tgaatgttgttttaaccaattgcacacatattaag 258  Q
    |||||||||||||||||| | ||||| |||||| ||||||||||| ||||||||    
T  41415072 tactccatccgttttaaaataaatgtcgttttagccaattgcacatatattaag 41415019  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 225 - 258
Target Start/End: Original strand, 45358800 - 45358833
Alignment:
Q  225 gaatgttgttttaaccaattgcacacatattaag 258  Q
    ||||||||||||||||||||||||||| ||||||    
T  45358800 gaatgttgttttaaccaattgcacacaaattaag 45358833  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 221 - 258
Target Start/End: Original strand, 31699216 - 31699253
Alignment:
Q  221 aaatgaatgttgttttaaccaattgcacacatattaag 258  Q
    |||||| ||| |||||||||||||||||||||||||||    
T  31699216 aaatgagtgtcgttttaaccaattgcacacatattaag 31699253  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 256
Target Start/End: Original strand, 45749410 - 45749462
Alignment:
Q  205 ttactccatccgttttaaa-tgaatgttgttttaaccaattgcacacatatta 256  Q
    ||||||||||||||||||| ||| ||| | |||||| ||||||||||||||||    
T  45749410 ttactccatccgttttaaaatgagtgtcgctttaactaattgcacacatatta 45749462  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 253
Target Start/End: Original strand, 24163625 - 24163673
Alignment:
Q  206 tactccatccgttttaaa-tgaatgttgttttaaccaattgcacacata 253  Q
    |||||||||||||||||| ||| ||| |||||| |||||||||||||||    
T  24163625 tactccatccgttttaaagtgagtgtcgttttagccaattgcacacata 24163673  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 258
Target Start/End: Original strand, 34445941 - 34445993
Alignment:
Q  206 tactccatccgttttaaatgaatgttgttttaaccaattgcacacatattaag 258  Q
    |||||| ||||||| |||||| ||| | |||||||||||||||| ||||||||    
T  34445941 tactccctccgtttaaaatgagtgtcgctttaaccaattgcacatatattaag 34445993  T

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