View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21440_low_57 (Length: 262)
Name: NF21440_low_57
Description: NF21440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21440_low_57 |
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Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 3111752 - 3111984
Alignment:
| Q |
1 |
cacaaatttgagagtttcttctagcttaatatacatgtttgagaagaaaatcttcttaatcattatttatggcatcaaaatagaaatttttatggtttat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
3111752 |
cacaaatttgagagtttcttctagcttaatatacatgtttgagaagaaaatcttcttaatcattat----ggcatcaaaatagaaatttttatggtttat |
3111847 |
T |
|
| Q |
101 |
tacatgacaccatttcaagtggtaagggaagcttacctgccaaaagagaatccgctgagtagctgtacttgagggtacaccttcaggccacataggaatc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3111848 |
tacatgacaccatttcaagtggtaagggaagcttacctgccaaaagagaatccgctgagtagctgtacttgagggtacaccttcaggccacataggaatc |
3111947 |
T |
|
| Q |
201 |
acaatatacacagagaatctttctttctgtttgattt |
237 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
3111948 |
acaatatacacagagaatctttctttctgtttgattt |
3111984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 113 - 237
Target Start/End: Original strand, 3118345 - 3118469
Alignment:
| Q |
113 |
tttcaagtggtaagggaagcttacctgccaaaagagaatccgctgagtagctgtacttgagggtacaccttcaggccacataggaatcacaatatacaca |
212 |
Q |
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||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3118345 |
tttcaagtggtaaaggaagctcacctgccaaaagagaatccgctgagtagctgtacttgagggtacaccttcaggccacataggaatcacaatatacaca |
3118444 |
T |
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| Q |
213 |
gagaatctttctttctgtttgattt |
237 |
Q |
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||||||| ||||| |||||||||| |
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| T |
3118445 |
cagaatctctctttgtgtttgattt |
3118469 |
T |
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