View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21440_low_59 (Length: 258)
Name: NF21440_low_59
Description: NF21440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21440_low_59 |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 17 - 241
Target Start/End: Complemental strand, 28227992 - 28227768
Alignment:
| Q |
17 |
gtttttcacgttaaaaattttggtgttctcatttacagcttctactccttttattgttgttattgtagttgttggttgtgtccgataaattgggttgttt |
116 |
Q |
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| T |
28227992 |
gtttttcacgttaaaaattttggtgttctcatctacagcttctactccttttattgttgttattgtagttgttggttgtgtccgataaattgggttgttt |
28227893 |
T |
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| Q |
117 |
aaattctacacgaaaaaagataatttacagcttctgtgtactccgtttgcacactctggttccaacagaaattcaggtcgacaatataaaaggagttgcc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28227892 |
aaattctacacgaaaaaagataatttacagcttctgtgtattccgtttgcacactctggttccaacagaaattcaggtcgacaatataaaaggagttgcc |
28227793 |
T |
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| Q |
217 |
aatcgacaattatgagtccatcaat |
241 |
Q |
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||||||||||||||||||||||||| |
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| T |
28227792 |
aatcgacaattatgagtccatcaat |
28227768 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 96
Target Start/End: Complemental strand, 36966746 - 36966696
Alignment:
| Q |
47 |
atttacagcttctactcctttt-attgttgttattgtagttgttggttgtg |
96 |
Q |
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| T |
36966746 |
atttacagtttttactcctttttattgttgttattgttgttgttggttgtg |
36966696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 77
Target Start/End: Complemental strand, 17920522 - 17920474
Alignment:
| Q |
30 |
aaaattttggtgttctcatttacagcttctactcc-ttttattgttgtt |
77 |
Q |
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|||||| ||||||||||||||| ||||| |||||| ||||||||||||| |
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| T |
17920522 |
aaaattatggtgttctcatttatagcttttactcctttttattgttgtt |
17920474 |
T |
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