View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21440_low_60 (Length: 256)
Name: NF21440_low_60
Description: NF21440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21440_low_60 |
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Alignment Details
Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 21 - 89
Target Start/End: Original strand, 41433657 - 41433725
Alignment:
| Q |
21 |
gaaaacaataatctgaagacatttcattacaaaagagttttagcaaataaataatcgaatatcaatata |
89 |
Q |
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| T |
41433657 |
gaaaacaataatctgaagacatttcattagaaaagagttttagcaaataaataatcgaatatcaatata |
41433725 |
T |
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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 81
Target Start/End: Original strand, 35381792 - 35381822
Alignment:
| Q |
51 |
aaaagagttttagcaaataaataatcgaata |
81 |
Q |
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| T |
35381792 |
aaaagagttttagcaaataaataatcgaata |
35381822 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 81
Target Start/End: Complemental strand, 16467501 - 16467473
Alignment:
| Q |
53 |
aagagttttagcaaataaataatcgaata |
81 |
Q |
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| T |
16467501 |
aagagttttagcaaataaataatcgaata |
16467473 |
T |
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