View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21440_low_63 (Length: 250)
Name: NF21440_low_63
Description: NF21440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21440_low_63 |
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Alignment Details
Target: chr7 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 83 - 249
Target Start/End: Original strand, 26226149 - 26226314
Alignment:
| Q |
83 |
tgacttagctggcacctaaagcgtcctctagccgtccttggaattgtctccacttcttgttcttttcttttttgtgttgatatattagaacaataagatt |
182 |
Q |
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| T |
26226149 |
tgacttagctggcccctcaagcgtcttctagccgtccttggaattgtctccacttcttgttcttttcttttttgtgttgatatattagaacaataagatt |
26226248 |
T |
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| Q |
183 |
agtttattaaagtttgagtagcatattctatgttgaaatacaaaaattaaaacatatgtctatgtct |
249 |
Q |
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| T |
26226249 |
agtttattaaggtttgagtagcatattctatgttgaaatactaaaact-aaacatatgtctatgtct |
26226314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 33 - 250
Target Start/End: Original strand, 26206461 - 26206685
Alignment:
| Q |
33 |
taatggccattttacaaccgtatccaatggaattggagctttttac--------cttgtgacttagctggcacctaaagcgtcctctagccgtccttgga |
124 |
Q |
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| T |
26206461 |
taatagccattttacaaccgtttccaatggaattggaggttataaggctatgctcttatgacttagctggcccctcaagcgtcttctagccgtccttgga |
26206560 |
T |
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| Q |
125 |
attgtctccacttcttgttcttttcttttttgtgttgatatattagaacaataagattagtttattaaagtttgagtagcatattctatgttgaaataca |
224 |
Q |
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| T |
26206561 |
attgtctccacttcttgttcttttcttttttgtgttgatatatgagaacaataagattagtttattaaggtttgagtagcatattctatgttgaaatact |
26206660 |
T |
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| Q |
225 |
aaaattaaaacatatgtctatgtctt |
250 |
Q |
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| T |
26206661 |
aaaact-aaacatatgtctatgtctt |
26206685 |
T |
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