View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21440_low_66 (Length: 239)
Name: NF21440_low_66
Description: NF21440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21440_low_66 |
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Alignment Details
Target: chr7 (Bit Score: 109; Significance: 6e-55; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 44674775 - 44674887
Alignment:
| Q |
1 |
tatgtgtggaggaattgattgatgtcactcatcttcgtcgaccgggcaattggaaagatatttggcgtctgaaggtgccaccaaaaatcaaacacttgtt |
100 |
Q |
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| T |
44674775 |
tatgtgtggaggaattgattgatgtcactcatcttcgtcgaccgggcaattggaaagatatttggcgtctgaaggtgccaccaaaaatcaaacacttctt |
44674874 |
T |
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| Q |
101 |
gtggcgcatgtgc |
113 |
Q |
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| T |
44674875 |
gtggcgcatgtgc |
44674887 |
T |
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Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 18610218 - 18610282
Alignment:
| Q |
1 |
tatgtgtggaggaattgattgatgtcactcatcttcgtcgaccgggcaattggaaagatatttgg |
65 |
Q |
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| T |
18610218 |
tatgtgttgaagaattaatcgatgtttctcatcttcatcgaccgggcaattggaaagatatttgg |
18610282 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 28 - 88
Target Start/End: Complemental strand, 22787116 - 22787056
Alignment:
| Q |
28 |
ctcatcttcgtcgaccgggcaattggaaagatatttggcgtctgaaggtgccaccaaaaat |
88 |
Q |
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| T |
22787116 |
ctcatcttcatcgtccgggcaattggaaggatatttggcggcttaaggttccaccaaaaat |
22787056 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 148
Target Start/End: Complemental strand, 13812648 - 13812548
Alignment:
| Q |
48 |
aattggaaagatatttggcgtctgaaggtgccaccaaaaatcaaacacttgttgtggcgcatgtgcatcgaatgccttcctactagagttcggttgcaag |
147 |
Q |
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| T |
13812648 |
aattggaatgatatttggcgtttaaaggttcctccgaaagtcaaaaatctgttatggcgaatgtgtaggggatgccttccaactagagttcgtttgcaag |
13812549 |
T |
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| Q |
148 |
a |
148 |
Q |
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| T |
13812548 |
a |
13812548 |
T |
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