View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21440_low_8 (Length: 476)

Name: NF21440_low_8
Description: NF21440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21440_low_8
NF21440_low_8
[»] chr5 (22 HSPs)
chr5 (21-205)||(5347943-5348125)
chr5 (21-184)||(36429532-36429691)
chr5 (283-402)||(5347745-5347865)
chr5 (283-405)||(36429301-36429423)
chr5 (284-405)||(5348501-5348622)
chr5 (21-79)||(26380043-26380101)
chr5 (284-404)||(31808297-31808417)
chr5 (284-401)||(29500700-29500817)
chr5 (283-401)||(36681845-36681961)
chr5 (290-399)||(10326845-10326955)
chr5 (283-404)||(29500028-29500150)
chr5 (283-399)||(7491273-7491392)
chr5 (283-343)||(36430060-36430119)
chr5 (373-405)||(38561205-38561237)
chr5 (372-404)||(43492563-43492595)
chr5 (374-405)||(17641780-17641811)
chr5 (374-405)||(19897411-19897442)
chr5 (291-401)||(33136590-33136700)
chr5 (374-405)||(34088594-34088625)
chr5 (350-402)||(971301-971352)
chr5 (377-405)||(26626638-26626666)
chr5 (377-405)||(38559590-38559618)
[»] chr3 (24 HSPs)
chr3 (21-205)||(54560253-54560435)
chr3 (21-187)||(50837975-50838139)
chr3 (24-184)||(47470944-47471099)
chr3 (283-405)||(54560052-54560175)
chr3 (283-405)||(50838253-50838375)
chr3 (284-405)||(54560812-54560933)
chr3 (283-402)||(43546388-43546507)
chr3 (284-405)||(1576505-1576626)
chr3 (284-405)||(1577506-1577626)
chr3 (284-405)||(50837479-50837599)
chr3 (283-401)||(47471470-47471588)
chr3 (283-405)||(35942117-35942241)
chr3 (283-356)||(47470763-47470835)
chr3 (298-402)||(50382749-50382853)
chr3 (290-399)||(35942778-35942887)
chr3 (373-405)||(51149984-51150016)
chr3 (373-405)||(52947850-52947882)
chr3 (374-405)||(1136259-1136290)
chr3 (374-405)||(49726051-49726082)
chr3 (374-405)||(52116929-52116960)
chr3 (374-405)||(52118328-52118359)
chr3 (374-405)||(52946385-52946416)
chr3 (298-405)||(31800374-31800480)
chr3 (290-343)||(50381934-50381986)
[»] chr2 (11 HSPs)
chr2 (21-205)||(4592847-4593027)
chr2 (76-184)||(10255919-10256027)
chr2 (283-405)||(4592646-4592769)
chr2 (21-115)||(10256012-10256106)
chr2 (284-405)||(4593399-4593519)
chr2 (290-404)||(22539115-22539226)
chr2 (283-346)||(10255748-10255810)
chr2 (290-400)||(33002900-33003009)
chr2 (311-400)||(33003741-33003831)
chr2 (351-402)||(45114954-45115006)
chr2 (284-401)||(10256485-10256601)
[»] chr8 (13 HSPs)
chr8 (21-205)||(14790893-14791079)
chr8 (29-184)||(20112011-20112160)
chr8 (283-405)||(14790691-14790814)
chr8 (284-405)||(14791449-14791570)
chr8 (283-402)||(20112271-20112389)
chr8 (86-138)||(18308860-18308912)
chr8 (290-398)||(20111519-20111625)
chr8 (317-402)||(21190065-21190151)
chr8 (374-405)||(767669-767700)
chr8 (374-405)||(11681632-11681663)
chr8 (374-405)||(14864991-14865022)
chr8 (374-405)||(32672309-32672340)
chr8 (374-405)||(35124690-35124721)
[»] chr6 (19 HSPs)
chr6 (21-194)||(15347663-15347834)
chr6 (21-187)||(17732532-17732698)
chr6 (21-187)||(6009145-6009313)
chr6 (21-184)||(30709739-30709902)
chr6 (283-405)||(15347451-15347574)
chr6 (283-401)||(17732810-17732928)
chr6 (290-405)||(15348198-15348312)
chr6 (283-401)||(6009422-6009540)
chr6 (283-402)||(30709513-30709630)
chr6 (284-405)||(6008660-6008781)
chr6 (283-401)||(30710273-30710390)
chr6 (284-405)||(17732034-17732155)
chr6 (374-405)||(1387656-1387687)
chr6 (374-405)||(4137674-4137705)
chr6 (374-405)||(4138979-4139010)
chr6 (374-405)||(10917878-10917909)
chr6 (375-405)||(10919337-10919367)
chr6 (374-402)||(1378477-1378505)
chr6 (374-402)||(1386225-1386253)
[»] chr4 (23 HSPs)
chr4 (21-184)||(27455168-27455329)
chr4 (100-187)||(49681835-49681918)
chr4 (283-405)||(27454935-27455057)
chr4 (284-405)||(621531-621652)
chr4 (290-368)||(11147802-11147879)
chr4 (283-403)||(21225819-21225938)
chr4 (284-402)||(620492-620610)
chr4 (290-403)||(31633614-31633726)
chr4 (21-91)||(49681780-49681850)
chr4 (317-401)||(49682059-49682143)
chr4 (425-467)||(24963703-24963745)
chr4 (374-405)||(2613650-2613681)
chr4 (374-405)||(3880873-3880904)
chr4 (374-405)||(16508207-16508238)
chr4 (374-405)||(50663014-50663045)
chr4 (374-405)||(50664486-50664517)
chr4 (374-405)||(52897778-52897809)
chr4 (374-405)||(56065215-56065246)
chr4 (375-405)||(677065-677095)
chr4 (290-370)||(31632437-31632514)
chr4 (284-399)||(49681288-49681402)
chr4 (373-401)||(52896329-52896357)
chr4 (377-405)||(55978494-55978522)
[»] chr1 (16 HSPs)
chr1 (24-187)||(47445501-47445660)
chr1 (284-403)||(27585312-27585429)
chr1 (283-402)||(47445769-47445889)
chr1 (284-403)||(36475966-36476085)
chr1 (285-401)||(36475295-36475411)
chr1 (290-405)||(47445007-47445122)
chr1 (311-367)||(26991038-26991094)
chr1 (374-405)||(11343419-11343450)
chr1 (374-405)||(11501439-11501470)
chr1 (374-405)||(14282799-14282830)
chr1 (374-405)||(14284258-14284289)
chr1 (290-401)||(27585987-27586096)
chr1 (374-405)||(38482531-38482562)
chr1 (290-401)||(45575952-45576061)
chr1 (318-370)||(786791-786843)
chr1 (374-402)||(42813860-42813888)
[»] scaffold0102 (3 HSPs)
scaffold0102 (21-184)||(32602-32761)
scaffold0102 (283-403)||(32372-32493)
scaffold0102 (283-401)||(33138-33257)
[»] chr7 (13 HSPs)
chr7 (21-146)||(36067599-36067724)
chr7 (291-405)||(3987239-3987352)
chr7 (283-401)||(30480689-30480808)
chr7 (290-400)||(32390892-32391000)
chr7 (299-399)||(6733042-6733141)
chr7 (295-402)||(36068113-36068220)
chr7 (290-405)||(41589203-41589315)
chr7 (283-403)||(36067317-36067435)
chr7 (290-402)||(6733140-6733250)
chr7 (150-187)||(36067544-36067581)
chr7 (374-405)||(31285489-31285520)
chr7 (374-405)||(31286930-31286961)
chr7 (374-403)||(35394776-35394805)


Alignment Details
Target: chr5 (Bit Score: 170; Significance: 5e-91; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 21 - 205
Target Start/End: Complemental strand, 5348125 - 5347943
Alignment:
Q  21 atcataacccttgttctttttccaacaagttcatgatcttttctgttattctttctgttgttgataaattccaaagggttgttgttgattaattcaagaa 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  5348125 atcataacccttgttctttttccaacaagttcatgatcttttctgttattctttctgttgttgatgaattccaaagggttgttgttgattaattcaagaa 5348026  T
Q  121 ggtaacaaacaagagagatagagagaatcattagaaagtgtgtgatgttgatgatgatgttgttgtttcttaaattttttctgga 205  Q
    |||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5348025 ggtaacaaacaagagag--agagagaatcattagaaagtgtgtgatgttgatgatgatgttgttgtttcttaaattttttctgga 5347943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 21 - 184
Target Start/End: Complemental strand, 36429691 - 36429532
Alignment:
Q  21 atcataacccttgttctttttccaacaagttcatgatcttttctgttattctttctgttgttgataaattccaaagggttgttgttgattaattcaagaa 120  Q
    ||||||| |||||||||||||| ||||||||||||||||||||| |||||| || |||||||||| ||||||||| ||||||||||||||||||||||||    
T  36429691 atcataaaccttgttctttttcaaacaagttcatgatcttttctattattcattttgttgttgatgaattccaaaaggttgttgttgattaattcaagaa 36429592  T
Q  121 ggtaacaaacaagagagatagagagaatcattagaaagtgtgtgatgttgatgatgatgttgtt 184  Q
    |||||||||||||||    |||||||||||||| ||||||||||||||| ||||||||||||||    
T  36429591 ggtaacaaacaagag----agagagaatcattataaagtgtgtgatgttaatgatgatgttgtt 36429532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 283 - 402
Target Start/End: Complemental strand, 5347865 - 5347745
Alignment:
Q  283 tagtcacttaacagccaaaacaaacggaaggggagtaattgactaaagtttgataatttcaaggaaatttttgaagtttcttaaaaatta-aggggtttt 381  Q
    ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| ||   ||||||||||||||||||||| |  ||||||||    
T  5347865 tagtcacttaacagccaaaacaaacggaaggggggtaattgactaacgtttgataatttcaggggggtttttgaagtttcttaaaaatcaggggggtttt 5347766  T
Q  382 tgacgaaagttacaatttcag 402  Q
    |||||||||||||||||||||    
T  5347765 tgacgaaagttacaatttcag 5347745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 283 - 405
Target Start/End: Complemental strand, 36429423 - 36429301
Alignment:
Q  283 tagtcacttaacagccaaaacaaacggaaggggagtaattgactaaagtttgataatttcaaggaaatttttgaagtttcttaaaaattaagggg-tttt 381  Q
    |||||| ||||||||||||||||||||| |||| |||||||||| | |||||||||||||| ||   ||||||||||||||||||||| | |||| ||||    
T  36429423 tagtcatttaacagccaaaacaaacggaggggg-gtaattgactgacgtttgataatttcaggggcgtttttgaagtttcttaaaaatcagggggatttt 36429325  T
Q  382 tgacgaaagttacaatttcagggg 405  Q
    ||||||||||||||||||||||||    
T  36429324 tgacgaaagttacaatttcagggg 36429301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 284 - 405
Target Start/End: Original strand, 5348501 - 5348622
Alignment:
Q  284 agtcacttaacagccaaaacaaacggaaggggagtaattgactaaagtttgataatttcaaggaaatttttgaagtttcttaaaaattaagggg-ttttt 382  Q
    ||||| ||||||||||||||||||||| |||| |||||||||||| |||||  ||||||| ||   ||||||||||||| ||||||| | |||| |||||    
T  5348501 agtcatttaacagccaaaacaaacggaggggg-gtaattgactaacgtttgtcaatttcagggggttttttgaagtttcctaaaaatcaggggggttttt 5348599  T
Q  383 gacgaaagttacaatttcagggg 405  Q
    |||||||| ||||||||||||||    
T  5348600 gacgaaagctacaatttcagggg 5348622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 21 - 79
Target Start/End: Complemental strand, 26380101 - 26380043
Alignment:
Q  21 atcataacccttgttctttttccaacaagttcatgatcttttctgttattctttctgtt 79  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  26380101 atcataaaccttgttctttttccaacaagttcatgatcttttctgttattcattctgtt 26380043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 284 - 404
Target Start/End: Complemental strand, 31808417 - 31808297
Alignment:
Q  284 agtcacttaacagccaaaacaaacggaaggggagtaattgactaaagtttgataatttcaaggaaatttttgaagtttcttaaaaattaagg-ggttttt 382  Q
    ||||| |||||||||||||||||| || |||| |||||||||||| |||| | ||||||| |  | ||||||||||||||||||||| | ||   |||||    
T  31808417 agtcatttaacagccaaaacaaactgaggggg-gtaattgactaacgtttaacaatttcaggagagtttttgaagtttcttaaaaatcagggaaattttt 31808319  T
Q  383 gacgaaagttacaatttcaggg 404  Q
    |||||||||||||| |||||||    
T  31808318 gacgaaagttacaaattcaggg 31808297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 284 - 401
Target Start/End: Original strand, 29500700 - 29500817
Alignment:
Q  284 agtcacttaacagccaaaacaaacggaaggggagtaattgactaaagtttgataatttcaaggaaatttttgaagtttcttaaaaattaaggg--gtttt 381  Q
    ||||| |||||| ||||||||||||||   ||  ||||||||||| |||||| |||||||||||  |||||||| |||||||||| ||| |||  |||||    
T  29500700 agtcatttaacaaccaaaacaaacggagaagg--taattgactaacgtttgacaatttcaaggatttttttgaactttcttaaaagttatggggagtttt 29500797  T
Q  382 tgacgaaagttacaatttca 401  Q
    |||||||| ||| |||||||    
T  29500798 tgacgaaaattataatttca 29500817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 283 - 401
Target Start/End: Original strand, 36681845 - 36681961
Alignment:
Q  283 tagtcacttaacagccaaaacaaacggaaggggagtaattgactaaagtttgataatttcaaggaaatttttgaagtttcttaaaaattaagggg-tttt 381  Q
    |||||| ||||||| |||||||||||| ||||| |||||||||||| |||||| ||||||| ||     |||||||||| |||||||| | |||| ||||    
T  36681845 tagtcatttaacagtcaaaacaaacgg-aggggggtaattgactaacgtttgacaatttcatgg--gggtttgaagttttttaaaaatcagggggatttt 36681941  T
Q  382 tgacgaaagttacaatttca 401  Q
    | ||||||||||||||||||    
T  36681942 taacgaaagttacaatttca 36681961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 290 - 399
Target Start/End: Original strand, 10326845 - 10326955
Alignment:
Q  290 ttaacagccaaaacaaacggaaggggagtaattgactaaagtttgataatttcaaggaaatttttg-aagtttcttaaaaattaagg-ggtttttgacga 387  Q
    ||||||||||||||| ||||| |||| ||| |||||||| |||||| |||||||||    |||||  ||||||||||||||| | || ||||||||||||    
T  10326845 ttaacagccaaaacagacggaggggg-gtagttgactaatgtttgacaatttcaagattttttttttaagtttcttaaaaatcatggaggtttttgacga 10326943  T
Q  388 aagttacaattt 399  Q
    ||||||||||||    
T  10326944 aagttacaattt 10326955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 283 - 404
Target Start/End: Complemental strand, 29500150 - 29500028
Alignment:
Q  283 tagtcacttaacagccaaaacaaacggaaggggagtaattgactaaagtttgataatttcaag-gaaatttttgaagtttcttaaaaattaagggg-ttt 380  Q
    |||||| |||| ||||||||||||||||  ||| |||||||||||| |||||| ||||| | | ||  ||| ||||||||||||||||||| |||| |||    
T  29500150 tagtcatttaagagccaaaacaaacggagaggg-gtaattgactaacgtttgacaattttatgagaggtttatgaagtttcttaaaaattagggggattt 29500052  T
Q  381 ttgacgaaagttacaatttcaggg 404  Q
    || || ||||||| ||||| ||||    
T  29500051 ttaacaaaagttataatttgaggg 29500028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 283 - 399
Target Start/End: Complemental strand, 7491392 - 7491273
Alignment:
Q  283 tagtcacttaacagccaaaacaaacggaaggggagtaattgactaaagtttgataatttcaagg---aaatttttgaagtttcttaaaaattaagg-ggt 378  Q
    |||||| |||||||||||||||||| ||||||| |||||||||||| |||| | ||||||| ||      ||||| ||||||||||||| | | || | |    
T  7491392 tagtcatttaacagccaaaacaaac-gaaggggggtaattgactaacgtttcacaatttcaggggtttttttttttaagtttcttaaaagtcagggtgat 7491294  T
Q  379 ttttgacgaaagttacaattt 399  Q
    |||||||||||||||||||||    
T  7491293 ttttgacgaaagttacaattt 7491273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 283 - 343
Target Start/End: Original strand, 36430060 - 36430119
Alignment:
Q  283 tagtcacttaacagccaaaacaaacggaaggggagtaattgactaaagtttgataatttca 343  Q
    |||||| ||||||||||||||||||||| |||| |||||||||||| |||||  |||||||    
T  36430060 tagtcatttaacagccaaaacaaacggatgggg-gtaattgactaacgtttggcaatttca 36430119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 373 - 405
Target Start/End: Original strand, 38561205 - 38561237
Alignment:
Q  373 aggggtttttgacgaaagttacaatttcagggg 405  Q
    |||||||||||||||||||||||||||||||||    
T  38561205 aggggtttttgacgaaagttacaatttcagggg 38561237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 372 - 404
Target Start/End: Complemental strand, 43492595 - 43492563
Alignment:
Q  372 aaggggtttttgacgaaagttacaatttcaggg 404  Q
    |||||||||||||||||||||||||||||||||    
T  43492595 aaggggtttttgacgaaagttacaatttcaggg 43492563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 374 - 405
Target Start/End: Original strand, 17641780 - 17641811
Alignment:
Q  374 ggggtttttgacgaaagttacaatttcagggg 405  Q
    ||||||||||||||||||||||||||||||||    
T  17641780 ggggtttttgacgaaagttacaatttcagggg 17641811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 374 - 405
Target Start/End: Complemental strand, 19897442 - 19897411
Alignment:
Q  374 ggggtttttgacgaaagttacaatttcagggg 405  Q
    ||||||||||||||||||||||||||||||||    
T  19897442 ggggtttttgacgaaagttacaatttcagggg 19897411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 291 - 401
Target Start/End: Original strand, 33136590 - 33136700
Alignment:
Q  291 taacagccaaaacaaacggaaggggagtaattgactaaagtttgataatttcaaggaaatttttgaagtttcttaaaaattaagg-ggtttttgacgaaa 389  Q
    |||||||||||||| | ||| |||| |||||||||||| |||| | ||||||| || | ||||||||||||   |||||||| || | |||||||| |||    
T  33136590 taacagccaaaacagatggaggggg-gtaattgactaacgtttaacaatttcaggggagtttttgaagttttgcaaaaattagggagttttttgacaaaa 33136688  T
Q  390 gttacaatttca 401  Q
    |||||| |||||    
T  33136689 gttacactttca 33136700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 374 - 405
Target Start/End: Complemental strand, 34088625 - 34088594
Alignment:
Q  374 ggggtttttgacgaaagttacaatttcagggg 405  Q
    ||||||||||||||||||||||||||||||||    
T  34088625 ggggtttttgacgaaagttacaatttcagggg 34088594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 350 - 402
Target Start/End: Original strand, 971301 - 971352
Alignment:
Q  350 tttttgaagtttcttaaaaattaaggggtttttgacgaaagttacaatttcag 402  Q
    |||||||||| |||||||||| ||||  |||||||||||| ||||||||||||    
T  971301 tttttgaagtctcttaaaaatcaaggt-tttttgacgaaaattacaatttcag 971352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 377 - 405
Target Start/End: Original strand, 26626638 - 26626666
Alignment:
Q  377 gtttttgacgaaagttacaatttcagggg 405  Q
    |||||||||||||||||||||||||||||    
T  26626638 gtttttgacgaaagttacaatttcagggg 26626666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 377 - 405
Target Start/End: Complemental strand, 38559618 - 38559590
Alignment:
Q  377 gtttttgacgaaagttacaatttcagggg 405  Q
    |||||||||||||||||||||||||||||    
T  38559618 gtttttgacgaaagttacaatttcagggg 38559590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 166; Significance: 1e-88; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 21 - 205
Target Start/End: Complemental strand, 54560435 - 54560253
Alignment:
Q  21 atcataacccttgttctttttccaacaagttcatgatcttttctgttattctttctgttgttgataaattccaaagggttgttgttgattaattcaagaa 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||    
T  54560435 atcataacccttgttctttttccaacaagttcatgatcttttctgttattctttctgttgttgatgaattccaaagggttgtagttgattaattcaagaa 54560336  T
Q  121 ggtaacaaacaagagagatagagagaatcattagaaagtgtgtgatgttgatgatgatgttgttgtttcttaaattttttctgga 205  Q
    |||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54560335 ggtaacaaacaagagag--agagagaatcattagaaagtgtgtgatgttgatgatgatgttgttgtttcttaaattttttctgga 54560253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 21 - 187
Target Start/End: Original strand, 50837975 - 50838139
Alignment:
Q  21 atcataacccttgttctttttccaacaagttcatgatcttttctgttattctttctgttgttgataaattccaaagggttgttgttgattaattcaagaa 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  50837975 atcataacccttgttctttttccaacaagttcatgatcttttctgttattcattctgttgttgatgaattccaaagggttgttgttgattaattcaagaa 50838074  T
Q  121 ggtaacaaacaagagagatagagagaatcattagaaagtgtgtgatgttgatgatgatgttgttgtt 187  Q
    |||||||||||||||||  |||||||||||||||||||||||||| ||||||||||||| |||||||    
T  50838075 ggtaacaaacaagagag--agagagaatcattagaaagtgtgtgaggttgatgatgatgatgttgtt 50838139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 24 - 184
Target Start/End: Complemental strand, 47471099 - 47470944
Alignment:
Q  24 ataacccttgttctttttccaacaagttcatgatcttttctgttattctttctgttgttgataaattccaaagggttgttgttgattaattcaagaaggt 123  Q
    |||| |||||||||||||||||||||||||||||||||||| |||||| || |||||||||| | |||||||||||||||||||||||||||||||||||    
T  47471099 ataaaccttgttctttttccaacaagttcatgatcttttctattattcattttgttgttgatga-ttccaaagggttgttgttgattaattcaagaaggt 47471001  T
Q  124 aacaaacaagagagatagagagaatcattagaaagtgtgtgatgttgatgatgatgttgtt 184  Q
    ||||||||||||    |||||||||||||| ||||||||||||||||||||||||||||||    
T  47471000 aacaaacaagag----agagagaatcattataaagtgtgtgatgttgatgatgatgttgtt 47470944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 283 - 405
Target Start/End: Complemental strand, 54560175 - 54560052
Alignment:
Q  283 tagtcacttaacagccaaaacaaacggaaggggagtaattgactaaagtttgataatttcaaggaaatttttgaagtttcttaaaaatta-aggggtttt 381  Q
    ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| ||   ||||||||||||||||||||| |  ||||||||    
T  54560175 tagtcacttaacagccaaaacaaacggaaggggggtaattgactaacgtttgataatttcatgggggtttttgaagtttcttaaaaatcaggggggtttt 54560076  T
Q  382 tgacgaaagttacaatttcagggg 405  Q
    ||||||||||||||||||||||||    
T  54560075 tgacgaaagttacaatttcagggg 54560052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 283 - 405
Target Start/End: Original strand, 50838253 - 50838375
Alignment:
Q  283 tagtcacttaacagccaaaacaaacggaaggggagtaattgactaaagtttgataatttcaaggaaatttttgaagtttcttaaaaatta-aggggtttt 381  Q
    |||||| ||||||||||||||||||||| |||| |||||||||||| |||||||||||||| || | |||||||||||||||||||||||  ||||||||    
T  50838253 tagtcatttaacagccaaaacaaacggaggggg-gtaattgactaacgtttgataatttcaggggagtttttgaagtttcttaaaaattaggggggtttt 50838351  T
Q  382 tgacgaaagttacaatttcagggg 405  Q
    ||||||||||||||||||||||||    
T  50838352 tgacgaaagttacaatttcagggg 50838375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 284 - 405
Target Start/End: Original strand, 54560812 - 54560933
Alignment:
Q  284 agtcacttaacagccaaaacaaacggaaggggagtaattgactaaagtttgataatttcaaggaaatttttgaagtttcttaaaaattaagggg-ttttt 382  Q
    ||||| ||||||||||||||||||||| |||| |||||||||||| |||||  ||||||| ||   ||||||||||||| ||||||| | |||| |||||    
T  54560812 agtcatttaacagccaaaacaaacggaggggg-gtaattgactaacgtttgtcaatttcagggggttttttgaagtttcctaaaaatcaggggggttttt 54560910  T
Q  383 gacgaaagttacaatttcagggg 405  Q
    |||||||| ||||||||||||||    
T  54560911 gacgaaagctacaatttcagggg 54560933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 283 - 402
Target Start/End: Complemental strand, 43546507 - 43546388
Alignment:
Q  283 tagtcacttaacagccaaaacaaacggaaggggagtaattgactaaagtttgataatttcaaggaaatttttgaagtttcttaaaaattaag-gggtttt 381  Q
    |||||| |||||||||||||||||||| ||||| |||||||||| | ||||||||||||||  |   ||||||||||||||||||||| | |  | ||||    
T  43546507 tagtcatttaacagccaaaacaaacgg-aggggggtaattgactgacgtttgataatttcagaggggtttttgaagtttcttaaaaatcaggaagatttt 43546409  T
Q  382 tgacgaaagttacaatttcag 402  Q
    |||||||||||||||||||||    
T  43546408 tgacgaaagttacaatttcag 43546388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 284 - 405
Target Start/End: Complemental strand, 1576626 - 1576505
Alignment:
Q  284 agtcacttaacagccaaaacaaacggaaggggagtaattgactaaagtttgataatttcaaggaaatttttgaagtttcttaaaaattaagggg-ttttt 382  Q
    ||||| |||| |||||||||||||||| |||| |||||||||||| |||||  ||||||| ||   ||||||||||||| ||||||| | |||| |||||    
T  1576626 agtcatttaatagccaaaacaaacggaggggg-gtaattgactaacgtttgtcaatttcaggggggtttttgaagtttcctaaaaatcaggggggttttt 1576528  T
Q  383 gacgaaagttacaatttcagggg 405  Q
    |||||||| ||||||||||||||    
T  1576527 gacgaaagctacaatttcagggg 1576505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 284 - 405
Target Start/End: Original strand, 1577506 - 1577626
Alignment:
Q  284 agtcacttaacagccaaaacaaacggaaggggagtaattgactaaagtttgataatttcaaggaaatttttgaagtttcttaaaaattaagggg-ttttt 382  Q
    ||||| ||||||||||||||||||||| |||| |||||||||||| |||||  ||||||| ||   ||||||||||||| ||||||| | |||| |||||    
T  1577506 agtcatttaacagccaaaacaaacggaggggg-gtaattgactaacgtttgtcaatttcaggggg-tttttgaagtttcctaaaaatcaggggggttttt 1577603  T
Q  383 gacgaaagttacaatttcagggg 405  Q
    |||||||| ||||||||||||||    
T  1577604 gacgaaagctacaatttcagggg 1577626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 284 - 405
Target Start/End: Complemental strand, 50837599 - 50837479
Alignment:
Q  284 agtcacttaacagccaaaacaaacggaaggggagtaattgactaaagtttgataatttcaaggaaatttttgaagtttcttaaaaatta-aggggttttt 382  Q
    ||||| |||||||||||||||||||| ||||| |||||||||||| |||||  |||||| |||   |||||||| |||  ||||||| |  |||||||||    
T  50837599 agtcatttaacagccaaaacaaacgg-aggggggtaattgactaacgtttgtcaatttc-agggggtttttgaaattttctaaaaatcaggggggttttt 50837502  T
Q  383 gacgaaagttacaatttcagggg 405  Q
    |||||||||||||||||||||||    
T  50837501 gacgaaagttacaatttcagggg 50837479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 283 - 401
Target Start/End: Original strand, 47471470 - 47471588
Alignment:
Q  283 tagtcacttaacagccaaaacaaacggaaggggagtaattgactaaagtttgataatttcaaggaaatttttgaagtttcttaaaaatta-aggggtttt 381  Q
    |||||| |||||||||||||||||| || |||| |||||||||||| |||||  ||||||| ||   ||||||||||||| ||||||| |  |||| |||    
T  47471470 tagtcatttaacagccaaaacaaacagaggggg-gtaattgactaacgtttggcaatttcaggggggtttttgaagtttcctaaaaatcagggggggttt 47471568  T
Q  382 tgacgaaagttacaatttca 401  Q
    ||||||||| ||||||||||    
T  47471569 tgacgaaagctacaatttca 47471588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 283 - 405
Target Start/End: Complemental strand, 35942241 - 35942117
Alignment:
Q  283 tagtcacttaacagccaaaacaaacggaagg--ggagtaattgactaaagtttgataatttcaaggaaatttttgaagtttcttaaaaattaaggg-gtt 379  Q
    |||||| ||||||||||||||||| ||| ||  || ||| |||||||| |||||| ||||||| || | ||||  ||||||||||||||| | | | |||    
T  35942241 tagtcatttaacagccaaaacaaatggagggagggggtagttgactaacgtttgacaatttcaggggagtttta-aagtttcttaaaaatcaggagagtt 35942143  T
Q  380 tttgacgaaagttacaatttcagggg 405  Q
    |||||||||||||||||||| |||||    
T  35942142 tttgacgaaagttacaattttagggg 35942117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 283 - 356
Target Start/End: Complemental strand, 47470835 - 47470763
Alignment:
Q  283 tagtcacttaacagccaaaacaaacggaaggggagtaattgactaaagtttgataatttcaaggaaatttttga 356  Q
    |||||| |||||||||||||||||||| ||||| |||||||||| | |||||||||||||| ||  ||||||||    
T  47470835 tagtcatttaacagccaaaacaaacgg-aggggggtaattgactgacgtttgataatttcagggggatttttga 47470763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 298 - 402
Target Start/End: Original strand, 50382749 - 50382853
Alignment:
Q  298 caaaacaaacggaaggggagtaattgactaaagtttgataatttcaaggaaatttttgaagtttcttaaaaattaaggg-gtttttgacgaaagttacaa 396  Q
    ||||||||||| |||||| |||||||||||| ||||||  |||||| ||   | ||||||||||||||||| | | ||| |||||||||||||||||| |    
T  50382749 caaaacaaacg-aaggggggtaattgactaacgtttgaccatttcatgggggtgtttgaagtttcttaaaagtcaggggagtttttgacgaaagttacga 50382847  T
Q  397 tttcag 402  Q
    ||||||    
T  50382848 tttcag 50382853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 290 - 399
Target Start/End: Original strand, 35942778 - 35942887
Alignment:
Q  290 ttaacagccaaaacaaacggaaggggagtaattgactaaagtttgataatttcaaggaaatttt-tgaagtttcttaaaaattaaggggtttttgacgaa 388  Q
    |||||| |||||||||| ||| |||| |||||||||||| |||| | ||||||||||   |||| ||||||||| ||||| | | ||| |||||||||||    
T  35942778 ttaacaaccaaaacaaatggaggggg-gtaattgactaacgtttaacaatttcaaggggtttttttgaagtttcataaaagtcaggggatttttgacgaa 35942876  T
Q  389 agttacaattt 399  Q
    | |||||||||    
T  35942877 aattacaattt 35942887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 373 - 405
Target Start/End: Complemental strand, 51150016 - 51149984
Alignment:
Q  373 aggggtttttgacgaaagttacaatttcagggg 405  Q
    |||||||||||||||||||||||||||||||||    
T  51150016 aggggtttttgacgaaagttacaatttcagggg 51149984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 373 - 405
Target Start/End: Original strand, 52947850 - 52947882
Alignment:
Q  373 aggggtttttgacgaaagttacaatttcagggg 405  Q
    |||||||||||||||||||||||||||||||||    
T  52947850 aggggtttttgacgaaagttacaatttcagggg 52947882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 374 - 405
Target Start/End: Complemental strand, 1136290 - 1136259
Alignment:
Q  374 ggggtttttgacgaaagttacaatttcagggg 405  Q
    ||||||||||||||||||||||||||||||||    
T  1136290 ggggtttttgacgaaagttacaatttcagggg 1136259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 374 - 405
Target Start/End: Original strand, 49726051 - 49726082
Alignment:
Q  374 ggggtttttgacgaaagttacaatttcagggg 405  Q
    ||||||||||||||||||||||||||||||||    
T  49726051 ggggtttttgacgaaagttacaatttcagggg 49726082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 374 - 405
Target Start/End: Complemental strand, 52116960 - 52116929
Alignment:
Q  374 ggggtttttgacgaaagttacaatttcagggg 405  Q
    ||||||||||||||||||||||||||||||||    
T  52116960 ggggtttttgacgaaagttacaatttcagggg 52116929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 374 - 405
Target Start/End: Original strand, 52118328 - 52118359
Alignment:
Q  374 ggggtttttgacgaaagttacaatttcagggg 405  Q
    ||||||||||||||||||||||||||||||||    
T  52118328 ggggtttttgacgaaagttacaatttcagggg 52118359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 374 - 405
Target Start/End: Complemental strand, 52946416 - 52946385
Alignment:
Q  374 ggggtttttgacgaaagttacaatttcagggg 405  Q
    ||||||||||||||||||||||||||||||||    
T  52946416 ggggtttttgacgaaagttacaatttcagggg 52946385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 405
Target Start/End: Original strand, 31800374 - 31800480
Alignment:
Q  298 caaaacaaacggaaggggagtaattgactaaagtttgataatttcaaggaaatttttgaagtttcttaaaaattaaggggtttt-tgacgaaagttacaa 396  Q
    ||||||||||||| ||||  ||| ||||||| |||| | ||||| |  | | |||| |||||||||||||||| | ||| |||| |||||||||||||||    
T  31800374 caaaacaaacggaggggg--taactgactaacgtttcacaattttataggagttttagaagtttcttaaaaatcatgggattttttgacgaaagttacaa 31800471  T
Q  397 tttcagggg 405  Q
    |||| ||||    
T  31800472 tttcggggg 31800480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 343
Target Start/End: Complemental strand, 50381986 - 50381934
Alignment:
Q  290 ttaacagccaaaacaaacggaaggggagtaattgactaaagtttgataatttca 343  Q
    |||||||||||||||||| || |||| |||||||||||| |||||| |||||||    
T  50381986 ttaacagccaaaacaaacagaggggg-gtaattgactaacgtttgacaatttca 50381934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 164; Significance: 2e-87; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 21 - 205
Target Start/End: Complemental strand, 4593027 - 4592847
Alignment:
Q  21 atcataacccttgttctttttccaacaagttcatgatcttttctgttattctttctgttgttgataaattccaaagggttgttgttgattaattcaagaa 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  4593027 atcataacccttgttctttttccaacaagttcatgatcttttctgttattctttctgttgttgatgaattccaaagggttgttgttgattaattcaagaa 4592928  T
Q  121 ggtaacaaacaagagagatagagagaatcattagaaagtgtgtgatgttgatgatgatgttgttgtttcttaaattttttctgga 205  Q
    |||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4592927 ggtaacaaacaagag----agagagaatcattagaaagtgtgtgatgttgatgatgatgttgttgtttcttaaattttttctgga 4592847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 76 - 184
Target Start/End: Complemental strand, 10256027 - 10255919
Alignment:
Q  76 tgttgttgataaattccaaagggttgttgttgattaattcaagaaggtaacaaacaagagagatagagagaatcattagaaagtgtgtgatgttgatgat 175  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||    
T  10256027 tgttgttgatgaattccaaagggttgttgttgattaattcaagaaggtaacaaacaagagagagagagagaatcattataaagtgtgtgatgttgatgat 10255928  T
Q  176 gatgttgtt 184  Q
    |||||||||    
T  10255927 gatgttgtt 10255919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 283 - 405
Target Start/End: Complemental strand, 4592769 - 4592646
Alignment:
Q  283 tagtcacttaacagccaaaacaaacggaaggggagtaattgactaaagtttgataatttcaaggaaatttttgaagtttcttaaaaatta-aggggtttt 381  Q
    ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| ||   ||||||||||||||||||||| |  ||||||||    
T  4592769 tagtcacttaacagccaaaacaaacggaaggggggtaattgactaacgtttgataatttcatgggggtttttgaagtttcttaaaaatcaggggggtttt 4592670  T
Q  382 tgacgaaagttacaatttcagggg 405  Q
    ||||||||||||||||||||||||    
T  4592669 tgacgaaagttacaatttcagggg 4592646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 21 - 115
Target Start/End: Complemental strand, 10256106 - 10256012
Alignment:
Q  21 atcataacccttgttctttttccaacaagttcatgatcttttctgttattctttctgttgttgataaattccaaagggttgttgttgattaattc 115  Q
    ||||||| |||||||||||||||||||||||||||||||||||| |||||| || |||||||||| ||||||||||||||||||||||| |||||    
T  10256106 atcataaaccttgttctttttccaacaagttcatgatcttttctattattcattttgttgttgatgaattccaaagggttgttgttgatgaattc 10256012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 284 - 405
Target Start/End: Original strand, 4593399 - 4593519
Alignment:
Q  284 agtcacttaacagccaaaacaaacggaaggggagtaattgactaaagtttgataatttcaaggaaatttttgaagtttcttaaaaattaaggggtttttg 383  Q
    ||||| ||||||||||||||||||||| ||||| ||||||||| | |||||  ||||||| ||   ||||||||||||| ||||||| | ||||||||||    
T  4593399 agtcatttaacagccaaaacaaacggaggggga-taattgactgacgtttgtcaatttcagggggttttttgaagtttcctaaaaatcagggggtttttg 4593497  T
Q  384 acgaaagttacaatttcagggg 405  Q
    ||||||| |||| |||||||||    
T  4593498 acgaaagctacattttcagggg 4593519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 290 - 404
Target Start/End: Original strand, 22539115 - 22539226
Alignment:
Q  290 ttaacagccaaaacaaacggaaggggagtaattgactaaagtttgataatttcaaggaaatttttgaagtttcttaaaaattaaggggtttttgacgaaa 389  Q
    ||||||||||||||| ||||| |||   ||||||||||| |||||| ||||||| ||   |||||||||||| |||||| | | |||||| |||||||||    
T  22539115 ttaacagccaaaacatacggagggg---taattgactaacgtttgacaatttcatggggttttttgaagttttttaaaagtcagggggttcttgacgaaa 22539211  T
Q  390 gttacaatttcaggg 404  Q
    |||||||||||||||    
T  22539212 gttacaatttcaggg 22539226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 283 - 346
Target Start/End: Complemental strand, 10255810 - 10255748
Alignment:
Q  283 tagtcacttaacagccaaaacaaacggaaggggagtaattgactaaagtttgataatttcaagg 346  Q
    |||||| |||||||||||||||||||| ||||| |||||||||| | |||||||||||||||||    
T  10255810 tagtcatttaacagccaaaacaaacgg-aggggggtaattgactgacgtttgataatttcaagg 10255748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 290 - 400
Target Start/End: Complemental strand, 33003009 - 33002900
Alignment:
Q  290 ttaacagccaaaacaaacggaaggggagtaattgactaaagtttgataatttcaaggaaatttttgaagtttcttaaaaattaaggggt--ttttgacga 387  Q
    |||||| |||||||||||||| ||||  ||||| ||||| |||||| |||||||  ||  ||||||||||||||||||||| |||||||  |||| | ||    
T  33003009 ttaacatccaaaacaaacggaggggg--taattaactaacgtttgacaatttcatcgag-tttttgaagtttcttaaaaatcaaggggttttttttatga 33002913  T
Q  388 aagttacaatttc 400  Q
    |||||||||||||    
T  33002912 aagttacaatttc 33002900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 311 - 400
Target Start/End: Original strand, 33003741 - 33003831
Alignment:
Q  311 aggggagtaattgactaaagtttgataatttcaaggaaatttttgaagtttcttaaaaatta-aggggtttttgacgaaagttacaatttc 400  Q
    ||||| ||||||||| || |||||| |||||||||| ||||||| ||||||||||||||| |  ||  ||||| |||||||||||||||||    
T  33003741 aggggggtaattgaccaacgtttgacaatttcaagggaattttttaagtttcttaaaaatcagcggttttttttacgaaagttacaatttc 33003831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 351 - 402
Target Start/End: Original strand, 45114954 - 45115006
Alignment:
Q  351 ttttgaagtttcttaaaaattaagggg-tttttgacgaaagttacaatttcag 402  Q
    |||||||||||||||||| | |||||| |||||||||||||||||||||||||    
T  45114954 ttttgaagtttcttaaaagtcaagggggtttttgacgaaagttacaatttcag 45115006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 284 - 401
Target Start/End: Original strand, 10256485 - 10256601
Alignment:
Q  284 agtcacttaacagccaaaacaaacggaaggggagtaattgactaaagtttgataatttcaaggaaatttttgaagtttcttaaaaattaagggg-ttttt 382  Q
    ||||| |||| ||||||||||||||||  ||| |||||||||||| |||||  ||||||| ||   ||||||||||||| || |||| | |||| |||||    
T  10256485 agtcatttaatagccaaaacaaacggagcggg-gtaattgactaacgtttggcaatttcaggggg-tttttgaagtttcctagaaatcaggggggttttt 10256582  T
Q  383 gacgaaagttacaatttca 401  Q
    |||||||| ||||||||||    
T  10256583 gacgaaagctacaatttca 10256601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 160; Significance: 4e-85; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 21 - 205
Target Start/End: Complemental strand, 14791079 - 14790893
Alignment:
Q  21 atcataacccttgttctttttccaacaagttcatgatcttttctgttattctttctgttgttgataaattccaaagggttgttgttgattaattcaagaa 120  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||    
T  14791079 atcataacccttgttctttttccaacaagttcatgatattttctgttattctttctgttgttgatgaattccaaagggttgttgttgattaattgaagaa 14790980  T
Q  121 ggtaacaaacaagagagatagagag--aatcattagaaagtgtgtgatgttgatgatgatgttgttgtttcttaaattttttctgga 205  Q
    |||||||||||||||||| ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14790979 ggtaacaaacaagagagagagagagataatcattagaaagtgtgtgatgttgatgatgatgttgttgtttcttaaattttttctgga 14790893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 29 - 184
Target Start/End: Original strand, 20112011 - 20112160
Alignment:
Q  29 ccttgttctttttccaacaagttcatgatcttttctgttattctttctgttgttgataaattccaaagggttgttgttgattaattcaagaaggtaacaa 128  Q
    |||||||||||||||||||||||||||||||||||| |||||| || |||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  20112011 ccttgttctttttccaacaagttcatgatcttttctattattcattttgttgttgatgaattccaaagggttgctgttgattaattcaagaaggtaacaa 20112110  T
Q  129 acaagagagatagagagaatcattagaaagtgtgtgatgttgatgatgatgttgtt 184  Q
    |||||      |||||||||||||| ||||||||||||||||||||||||||||||    
T  20112111 acaag------agagagaatcattataaagtgtgtgatgttgatgatgatgttgtt 20112160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 283 - 405
Target Start/End: Complemental strand, 14790814 - 14790691
Alignment:
Q  283 tagtcacttaacagccaaaacaaacggaaggggagtaattgactaaagtttgataatttcaaggaaatttttgaagtttcttaaaaatta-aggggtttt 381  Q
    ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| ||   ||||||||||||||||||||| |  ||||||||    
T  14790814 tagtcacttaacagccaaaacaaacggaaggggggtaattgactaacgtttgataatttcaggggggtttttgaagtttcttaaaaatcaggggggtttt 14790715  T
Q  382 tgacgaaagttacaatttcagggg 405  Q
    ||||||||||||||||||||||||    
T  14790714 tgacgaaagttacaatttcagggg 14790691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 284 - 405
Target Start/End: Original strand, 14791449 - 14791570
Alignment:
Q  284 agtcacttaacagccaaaacaaacggaaggggagtaattgactaaagtttgataatttcaaggaaatttttgaagtttcttaaaaattaagggg-ttttt 382  Q
    ||||| ||||||||||||||||||||| |||| |||||||||||| |||||  ||||||| ||   ||||||||||||| ||||||| | |||| |||||    
T  14791449 agtcatttaacagccaaaacaaacggaggggg-gtaattgactaacgtttgtcaatttcagggggttttttgaagtttcctaaaaatcaggggggttttt 14791547  T
Q  383 gacgaaagttacaatttcagggg 405  Q
    |||||||| ||||||||||||||    
T  14791548 gacgaaagctacaatttcagggg 14791570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 283 - 402
Target Start/End: Original strand, 20112271 - 20112389
Alignment:
Q  283 tagtcacttaacagccaaaacaaacggaaggggagtaattgactaaagtttgataatttcaaggaaatttttgaagtttcttaaaaattaaggg-gtttt 381  Q
    |||||| |||||||||||||||||||||  ||| |||||||||||| ||||||||||||||  |   ||||||||||||||||||||| | |||  ||||    
T  20112271 tagtcatttaacagccaaaacaaacgga--gggggtaattgactaacgtttgataatttcagtggggtttttgaagtttcttaaaaatcaggggtttttt 20112368  T
Q  382 tgacgaaagttacaatttcag 402  Q
    | |||||||||||||||||||    
T  20112369 ttacgaaagttacaatttcag 20112389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 86 - 138
Target Start/End: Complemental strand, 18308912 - 18308860
Alignment:
Q  86 aaattccaaagggttgttgttgattaattcaagaaggtaacaaacaagagaga 138  Q
    ||||||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  18308912 aaattccaaagagttgttgttgattaattcaagatggtaacaaacaagagaga 18308860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 290 - 398
Target Start/End: Complemental strand, 20111625 - 20111519
Alignment:
Q  290 ttaacagccaaaacaaacggaaggggagtaattgactaaagtttgataatttcaaggaaatttttgaagtttcttaaaaattaaggggtttttgacgaaa 389  Q
    |||||||| |||||||||||| |||| |||||||||||| |||||| ||||| | |   ||||||||| |||| |||||||| ||||| |||||||||||    
T  20111625 ttaacagctaaaacaaacggaggggg-gtaattgactaatgtttgacaattttaggaggatttttgaaatttcctaaaaatt-agggggttttgacgaaa 20111528  T
Q  390 gttacaatt 398  Q
    | |||||||    
T  20111527 gctacaatt 20111519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 317 - 402
Target Start/End: Complemental strand, 21190151 - 21190065
Alignment:
Q  317 gtaattgactaaagtttgataatttcaaggaaatttttgaagtttcttaaaaattaaggggt-ttttgacgaaagttacaatttcag 402  Q
    |||||||||||| |||||||||||||| |||  ||||| ||||| ||||||| | ||||||| ||||||| ||||||| ||||||||    
T  21190151 gtaattgactaacgtttgataatttcatggagttttttaaagttccttaaaattcaaggggtcttttgacaaaagttataatttcag 21190065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 374 - 405
Target Start/End: Original strand, 767669 - 767700
Alignment:
Q  374 ggggtttttgacgaaagttacaatttcagggg 405  Q
    ||||||||||||||||||||||||||||||||    
T  767669 ggggtttttgacgaaagttacaatttcagggg 767700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 374 - 405
Target Start/End: Original strand, 11681632 - 11681663
Alignment:
Q  374 ggggtttttgacgaaagttacaatttcagggg 405  Q
    ||||||||||||||||||||||||||||||||    
T  11681632 ggggtttttgacgaaagttacaatttcagggg 11681663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 374 - 405
Target Start/End: Complemental strand, 14865022 - 14864991
Alignment:
Q  374 ggggtttttgacgaaagttacaatttcagggg 405  Q
    ||||||||||||||||||||||||||||||||    
T  14865022 ggggtttttgacgaaagttacaatttcagggg 14864991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 374 - 405
Target Start/End: Complemental strand, 32672340 - 32672309
Alignment:
Q  374 ggggtttttgacgaaagttacaatttcagggg 405  Q
    ||||||||||||||||||||||||||||||||    
T  32672340 ggggtttttgacgaaagttacaatttcagggg 32672309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 374 - 405
Target Start/End: Original strand, 35124690 - 35124721
Alignment:
Q  374 ggggtttttgacgaaagttacaatttcagggg 405  Q
    ||||||||||||||||||||||||||||||||    
T  35124690 ggggtttttgacgaaagttacaatttcagggg 35124721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 151; Significance: 1e-79; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 21 - 194
Target Start/End: Complemental strand, 15347834 - 15347663
Alignment:
Q  21 atcataacccttgttctttttccaacaagttcatgatcttttctgttattctttctgttgttgataaattccaaagggttgttgttgattaattcaagaa 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||    
T  15347834 atcataacccttgttctttttccaacaagttcatgatcttttctgttattctttctgttgttgatgaattccaaagggttgttgttgattaatttaagaa 15347735  T
Q  121 ggtaacaaacaagagagatagagagaatcattagaaagtgtgtgatgttgatgatgatgttgttgtttcttaaa 194  Q
    |||||||||||||||||  ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  15347734 ggtaacaaacaagagag--agagagaatcattagaaagtgtgcgatgttgatgatgatgttgttgtttcttaaa 15347663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 21 - 187
Target Start/End: Original strand, 17732532 - 17732698
Alignment:
Q  21 atcataacccttgttctttttccaacaagttcatgatcttttctgttattctttctgttgttgataaattccaaagggttgttgttgattaattcaagaa 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  17732532 atcataacccttgttctttttccaacaagttcatgatcttttctgttattcattctgttgttgatgaattccaaagggttgttgttgattaattcaagaa 17732631  T
Q  121 ggtaacaaacaagagagatagagagaatcattagaaagtgtgtgatgttgatgatgatgttgttgtt 187  Q
    |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |||||||    
T  17732632 ggtaacaaacaagagagagagagagaatcattagaaagtgtgtgaggttgatgatgatgatgttgtt 17732698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 21 - 187
Target Start/End: Original strand, 6009145 - 6009313
Alignment:
Q  21 atcataacccttgttctttttccaacaagttcatgatcttttctgttattctttctgttgttgataaattccaaagggttgttgttgattaattcaagaa 120  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||||| || |||||||||| ||||||||||||||||||||||||||||||||||    
T  6009145 atcataacccttgttctttttccaacaagtccacgatcttttctgttattcattttgttgttgatgaattccaaagggttgttgttgattaattcaagaa 6009244  T
Q  121 ggtaacaaaca--agagagatagagagaatcattagaaagtgtgtgatgttgatgatgatgttgttgtt 187  Q
    |||||||||||  ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  6009245 ggtaacaaacaagagagagagagagagaatcattagaaagtgtgtgatgttgatgatgatgttgttgtt 6009313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 21 - 184
Target Start/End: Complemental strand, 30709902 - 30709739
Alignment:
Q  21 atcataacccttgttctttttccaacaagttcatgatcttttctgttattctttctgttgttgataaattccaaagggttgttgttgattaattcaagaa 120  Q
    ||||||| |||||||||||||| ||||||||||||||||||||| |||||| || |||||||||| ||||||||||||||||||||||||||||||||||    
T  30709902 atcataaaccttgttctttttcaaacaagttcatgatcttttctattattcattttgttgttgatgaattccaaagggttgttgttgattaattcaagaa 30709803  T
Q  121 ggtaacaaacaagagagatagagagaatcattagaaagtgtgtgatgttgatgatgatgttgtt 184  Q
    |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||    
T  30709802 ggtaacaaacaagagagagagagagaatcattataaagtgtgtgatgttgatgatgatgttgtt 30709739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 283 - 405
Target Start/End: Complemental strand, 15347574 - 15347451
Alignment:
Q  283 tagtcacttaacagccaaaacaaacggaaggggagtaattgactaaagtttgataatttcaaggaaatttttgaagtttcttaaaaatta-aggggtttt 381  Q
    ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| ||   ||||||||||||||||||||| |  ||||||||    
T  15347574 tagtcacttaacagccaaaacaaacggaaggggggtaattgactaacgtttgataatttcaggggggtttttgaagtttcttaaaaatcaggggggtttt 15347475  T
Q  382 tgacgaaagttacaatttcagggg 405  Q
    ||||||||||||||||||||||||    
T  15347474 tgacgaaagttacaatttcagggg 15347451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 283 - 401
Target Start/End: Original strand, 17732810 - 17732928
Alignment:
Q  283 tagtcacttaacagccaaaacaaacggaaggggagtaattgactaaagtttgataatttcaaggaaatttttgaagtttcttaaaaattaagggg-tttt 381  Q
    |||||| ||||||||||||||||||||| |||| ||||||| |||| |||||||||||||| ||   ||||||||||||||||||||| | |||| ||||    
T  17732810 tagtcatttaacagccaaaacaaacggaggggg-gtaattggctaacgtttgataatttcaggggggtttttgaagtttcttaaaaatcagggggttttt 17732908  T
Q  382 tgacgaaagttacaatttca 401  Q
    ||||||||||||||||||||    
T  17732909 tgacgaaagttacaatttca 17732928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 290 - 405
Target Start/End: Original strand, 15348198 - 15348312
Alignment:
Q  290 ttaacagccaaaacaaacggaaggggagtaattgactaaagtttgataatttcaaggaaatttttgaagtttcttaaaaattaaggggtttttgacgaaa 389  Q
    |||||||||||||||||||||||||| |||||||||||| |||||  ||||||| ||   ||||||||||||| ||||||| | ||| ||||||||||||    
T  15348198 ttaacagccaaaacaaacggaagggg-gtaattgactaacgtttgtcaatttcagggggttttttgaagtttcctaaaaatcaggggatttttgacgaaa 15348296  T
Q  390 gttacaatttcagggg 405  Q
    | ||||||||||||||    
T  15348297 gctacaatttcagggg 15348312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 283 - 401
Target Start/End: Original strand, 6009422 - 6009540
Alignment:
Q  283 tagtcacttaacagccaaaacaaacggaaggggagtaattgactaaagtttgataatttcaaggaaatttttgaagtttcttaaaaattaag-gggtttt 381  Q
    |||||| |||||||||||||||||||||  |||| ||||||||||| |||||||||||||| || | ||||||||||||||||||||| | |   |||||    
T  6009422 tagtcatttaacagccaaaacaaacggagaggga-taattgactaacgtttgataatttcaggggagtttttgaagtttcttaaaaatcaggaaagtttt 6009520  T
Q  382 tgacgaaagttacaatttca 401  Q
    |||||||||||| |||||||    
T  6009521 tgacgaaagttataatttca 6009540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 283 - 402
Target Start/End: Complemental strand, 30709630 - 30709513
Alignment:
Q  283 tagtcacttaacagccaaaacaaacggaaggggagtaattgactaaagtttgataatttcaaggaaatttttgaagtttcttaaaaattaagggg-tttt 381  Q
    |||||| ||||||||||||||||||||| ||||  |||| |||| | ||||||||||||||  |   ||||||||||||||||||||| | |||| ||||    
T  30709630 tagtcatttaacagccaaaacaaacggaggggg--taat-gactgacgtttgataatttcagaggcgtttttgaagtttcttaaaaatcagggggatttt 30709534  T
Q  382 tgacgaaagttacaatttcag 402  Q
    |||||||||||||||||||||    
T  30709533 tgacgaaagttacaatttcag 30709513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 284 - 405
Target Start/End: Complemental strand, 6008781 - 6008660
Alignment:
Q  284 agtcacttaacagccaaaacaaacggaaggggagtaattgactaaagtttgataatttcaaggaaatttttgaagtttcttaaaaattaagg-ggttttt 382  Q
    ||||| ||||||||||||||||| ||| |||| || ||||||||| |||||  ||||||| ||   ||||||||||||| ||||||| | || |||||||    
T  6008781 agtcatttaacagccaaaacaaatggaggggg-gtgattgactaacgtttgtcaatttcagggggctttttgaagtttcctaaaaatcagggaggttttt 6008683  T
Q  383 gacgaaagttacaatttcagggg 405  Q
    |||||||| ||||||||||||||    
T  6008682 gacgaaagctacaatttcagggg 6008660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 283 - 401
Target Start/End: Original strand, 30710273 - 30710390
Alignment:
Q  283 tagtcacttaacagccaaaacaaacggaaggggagtaattgactaaagtttgataatttcaaggaaatttttgaagtttcttaaaaattaagggg-tttt 381  Q
    |||||| |||||||||||||||||| || |||| |||||||||||| |||||  ||||||| ||   ||||||||||||| ||||||| | |||| ||||    
T  30710273 tagtcatttaacagccaaaacaaacagatgggg-gtaattgactaacgtttggcaatttcaggggg-tttttgaagtttcctaaaaatcaggggggtttt 30710370  T
Q  382 tgacgaaagttacaatttca 401  Q
    ||||||||| ||||||||||    
T  30710371 tgacgaaagctacaatttca 30710390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 284 - 405
Target Start/End: Complemental strand, 17732155 - 17732034
Alignment:
Q  284 agtcacttaacagccaaaacaaacggaaggggagtaattgactaaagtttgataatttcaaggaaatttttgaagtttcttaaaaattaagggg-ttttt 382  Q
    ||||| |||||||||||||||||||| ||||| |||||||||||| |||||  ||||||| ||   |||||||| |||  ||||||| | |||| |||||    
T  17732155 agtcatttaacagccaaaacaaacgg-aggggggtaattgactaacgtttgtcaatttcagggggttttttgaaattttctaaaaatcagggggattttt 17732057  T
Q  383 gacgaaagttacaatttcagggg 405  Q
    |||||||  ||||||||||||||    
T  17732056 gacgaaaactacaatttcagggg 17732034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 374 - 405
Target Start/End: Original strand, 1387656 - 1387687
Alignment:
Q  374 ggggtttttgacgaaagttacaatttcagggg 405  Q
    ||||||||||||||||||||||||||||||||    
T  1387656 ggggtttttgacgaaagttacaatttcagggg 1387687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 374 - 405
Target Start/End: Complemental strand, 4137705 - 4137674
Alignment:
Q  374 ggggtttttgacgaaagttacaatttcagggg 405  Q
    ||||||||||||||||||||||||||||||||    
T  4137705 ggggtttttgacgaaagttacaatttcagggg 4137674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 374 - 405
Target Start/End: Original strand, 4138979 - 4139010
Alignment:
Q  374 ggggtttttgacgaaagttacaatttcagggg 405  Q
    ||||||||||||||||||||||||||||||||    
T  4138979 ggggtttttgacgaaagttacaatttcagggg 4139010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 374 - 405
Target Start/End: Complemental strand, 10917909 - 10917878
Alignment:
Q  374 ggggtttttgacgaaagttacaatttcagggg 405  Q
    ||||||||||||||||||||||||||||||||    
T  10917909 ggggtttttgacgaaagttacaatttcagggg 10917878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 375 - 405
Target Start/End: Original strand, 10919337 - 10919367
Alignment:
Q  375 gggtttttgacgaaagttacaatttcagggg 405  Q
    |||||||||||||||||||||||||||||||    
T  10919337 gggtttttgacgaaagttacaatttcagggg 10919367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 374 - 402
Target Start/End: Complemental strand, 1378505 - 1378477
Alignment:
Q  374 ggggtttttgacgaaagttacaatttcag 402  Q
    |||||||||||||||||||||||||||||    
T  1378505 ggggtttttgacgaaagttacaatttcag 1378477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 374 - 402
Target Start/End: Complemental strand, 1386253 - 1386225
Alignment:
Q  374 ggggtttttgacgaaagttacaatttcag 402  Q
    |||||||||||||||||||||||||||||    
T  1386253 ggggtttttgacgaaagttacaatttcag 1386225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 129; Significance: 1e-66; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 21 - 184
Target Start/End: Complemental strand, 27455329 - 27455168
Alignment:
Q  21 atcataacccttgttctttttccaacaagttcatgatcttttctgttattctttctgttgttgataaattccaaagggttgttgttgattaattcaagaa 120  Q
    ||||||| |||||||||||||||||||||||||||||||||||| |||||| || |||||||||| ||||||||||||||||||||||||||||||||||    
T  27455329 atcataaaccttgttctttttccaacaagttcatgatcttttctattattcattttgttgttgatgaattccaaagggttgttgttgattaattcaagaa 27455230  T
Q  121 ggtaacaaacaagagagatagagagaatcattagaaagtgtgtgatgttgatgatgatgttgtt 184  Q
    |||||||||||||||||  |||||||||||||| ||||||||||||||||||||||||||||||    
T  27455229 ggtaacaaacaagagag--agagagaatcattataaagtgtgtgatgttgatgatgatgttgtt 27455168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 100 - 187
Target Start/End: Original strand, 49681835 - 49681918
Alignment:
Q  100 tgttgttgattaattcaagaaggtaacaaacaagagagatagagagaatcattagaaagtgtgtgatgttgatgatgatgttgttgtt 187  Q
    |||||||||| ||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||    
T  49681835 tgttgttgatgaattcaagaaggtaacaaacaagagaga----gagaatcattagaaagtgtgtgatgttgatgatgatgttgttgtt 49681918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 283 - 405
Target Start/End: Complemental strand, 27455057 - 27454935
Alignment:
Q  283 tagtcacttaacagccaaaacaaacggaaggggagtaattgactaaagtttgataatttcaaggaaatttttgaagtttcttaaaaattaagggg-tttt 381  Q
    |||||| ||||||||||||||||||||| |||| |||||||||| | ||||||||||||||| |   ||||| ||||||||||||||| | |||| ||||    
T  27455057 tagtcatttaacagccaaaacaaacggaggggg-gtaattgactgacgtttgataatttcaaaggggtttttcaagtttcttaaaaatcaggggggtttt 27454959  T
Q  382 tgacgaaagttacaatttcagggg 405  Q
    ||||||||||||||||||||||||    
T  27454958 tgacgaaagttacaatttcagggg 27454935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 284 - 405
Target Start/End: Original strand, 621531 - 621652
Alignment:
Q  284 agtcacttaacagccaaaacaaacggaaggggagtaattgactaaagtttgataatttcaaggaaatttttgaagtttcttaaaaattaagggg-ttttt 382  Q
    ||||| ||||||||||||||||||||| |||| |||||||||||| |||||  ||||||| ||   ||||||||||||| ||||||| | |||| |||||    
T  621531 agtcatttaacagccaaaacaaacggaggggg-gtaattgactaacgtttgtcaatttcaggggggtttttgaagtttcctaaaaatcaggggggttttt 621629  T
Q  383 gacgaaagttacaatttcagggg 405  Q
    |||||||| ||||||||||||||    
T  621630 gacgaaagctacaatttcagggg 621652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 290 - 368
Target Start/End: Complemental strand, 11147879 - 11147802
Alignment:
Q  290 ttaacagccaaaacaaacggaaggggagtaattgactaaagtttgataatttcaaggaaatttttgaagtttcttaaaa 368  Q
    ||||||||||||||||||||| |||| |||||||||||| |||||| |||||||||| |||||||||||||||||||||    
T  11147879 ttaacagccaaaacaaacggaggggg-gtaattgactaacgtttgacaatttcaagggaatttttgaagtttcttaaaa 11147802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 283 - 403
Target Start/End: Complemental strand, 21225938 - 21225819
Alignment:
Q  283 tagtcacttaacagccaaaacaaacggaaggggagtaattgactaaagtttgataatttcaaggaaatttttgaagtttcttaaaaattaagggg-tttt 381  Q
    |||||| |||||||||||||||||||||  |||  ||||||||||| |||||| |||||||| |   ||||| ||||||||||||||| |||  | ||||    
T  21225938 tagtcatttaacagccaaaacaaacggagaggg--taattgactaaggtttgacaatttcaaaggtgtttttaaagtttcttaaaaatcaagaagatttt 21225841  T
Q  382 tgacgaaagttacaatttcagg 403  Q
    ||||||||||||||||||||||    
T  21225840 tgacgaaagttacaatttcagg 21225819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 284 - 402
Target Start/End: Complemental strand, 620610 - 620492
Alignment:
Q  284 agtcacttaacagccaaaacaaacggaaggggagtaattgactaaagtttgataatttcaaggaaatttttgaagtttcttaaaaattaagggg-ttttt 382  Q
    ||||| ||||||||||||||||||||| |||| |||||||||||| |||||  ||||||| ||   ||||||||||||| ||||||| | |||| |||||    
T  620610 agtcatttaacagccaaaacaaacggaggggg-gtaattgactaacgtttgtcaatttcaggggggtttttgaagtttcctaaaaatcagggggattttt 620512  T
Q  383 gacgaaagttacaatttcag 402  Q
    |||||||  |||||||||||    
T  620511 gacgaaaactacaatttcag 620492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 290 - 403
Target Start/End: Original strand, 31633614 - 31633726
Alignment:
Q  290 ttaacagccaaaacaaacggaaggggagtaattgactaaagtttgataatttcaaggaaatttttgaagtttcttaaaaattaa-ggggtttttgacgaa 388  Q
    ||||||||| ||||||||||| ||||  |||| |||||| |||||| ||||| | ||   |||||||||||||||||||||||| |||||||||||||||    
T  31633614 ttaacagcccaaacaaacggaggggg--taatggactaatgtttgacaattttatgggggtttttgaagtttcttaaaaattaagggggtttttgacgaa 31633711  T
Q  389 agttacaatttcagg 403  Q
    | || ||||||||||    
T  31633712 acttccaatttcagg 31633726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 21 - 91
Target Start/End: Original strand, 49681780 - 49681850
Alignment:
Q  21 atcataacccttgttctttttccaacaagttcatgatcttttctgttattctttctgttgttgataaattc 91  Q
    ||||||| | |||||||||||||||||| ||||||||||||| |||||||| || |||||||||| |||||    
T  49681780 atcataaacgttgttctttttccaacaatttcatgatcttttatgttattcattatgttgttgatgaattc 49681850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 317 - 401
Target Start/End: Original strand, 49682059 - 49682143
Alignment:
Q  317 gtaattgactaaagtttgataatttcaaggaaatttttgaagtttcttaaaaattaagg-ggtttttgacgaaagttacaatttca 401  Q
    |||||||||||| | |||||||||||| || | ||||||||||||||||||||||| ||   ||||||||||||||||||||||||    
T  49682059 gtaattgactaacgattgataatttcagggga-tttttgaagtttcttaaaaattagggaattttttgacgaaagttacaatttca 49682143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 425 - 467
Target Start/End: Original strand, 24963703 - 24963745
Alignment:
Q  425 gaaatttatgtgatatacgacaacacacactactttttcttct 467  Q
    |||||||||||||||| ||||||||||||||||||||||||||    
T  24963703 gaaatttatgtgatatgcgacaacacacactactttttcttct 24963745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 374 - 405
Target Start/End: Complemental strand, 2613681 - 2613650
Alignment:
Q  374 ggggtttttgacgaaagttacaatttcagggg 405  Q
    ||||||||||||||||||||||||||||||||    
T  2613681 ggggtttttgacgaaagttacaatttcagggg 2613650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 374 - 405
Target Start/End: Complemental strand, 3880904 - 3880873
Alignment:
Q  374 ggggtttttgacgaaagttacaatttcagggg 405  Q
    ||||||||||||||||||||||||||||||||    
T  3880904 ggggtttttgacgaaagttacaatttcagggg 3880873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 374 - 405
Target Start/End: Original strand, 16508207 - 16508238
Alignment:
Q  374 ggggtttttgacgaaagttacaatttcagggg 405  Q
    ||||||||||||||||||||||||||||||||    
T  16508207 ggggtttttgacgaaagttacaatttcagggg 16508238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 374 - 405
Target Start/End: Complemental strand, 50663045 - 50663014
Alignment:
Q  374 ggggtttttgacgaaagttacaatttcagggg 405  Q
    ||||||||||||||||||||||||||||||||    
T  50663045 ggggtttttgacgaaagttacaatttcagggg 50663014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 374 - 405
Target Start/End: Original strand, 50664486 - 50664517
Alignment:
Q  374 ggggtttttgacgaaagttacaatttcagggg 405  Q
    ||||||||||||||||||||||||||||||||    
T  50664486 ggggtttttgacgaaagttacaatttcagggg 50664517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 374 - 405
Target Start/End: Original strand, 52897778 - 52897809
Alignment:
Q  374 ggggtttttgacgaaagttacaatttcagggg 405  Q
    ||||||||||||||||||||||||||||||||    
T  52897778 ggggtttttgacgaaagttacaatttcagggg 52897809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 374 - 405
Target Start/End: Original strand, 56065215 - 56065246
Alignment:
Q  374 ggggtttttgacgaaagttacaatttcagggg 405  Q
    ||||||||||||||||||||||||||||||||    
T  56065215 ggggtttttgacgaaagttacaatttcagggg 56065246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 375 - 405
Target Start/End: Complemental strand, 677095 - 677065
Alignment:
Q  375 gggtttttgacgaaagttacaatttcagggg 405  Q
    |||||||||||||||||||||||||||||||    
T  677095 gggtttttgacgaaagttacaatttcagggg 677065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 370
Target Start/End: Complemental strand, 31632514 - 31632437
Alignment:
Q  290 ttaacagccaaaacaaacggaaggggagtaattgactaaagtttgataatttcaaggaaatttttgaagtttcttaaaaat 370  Q
    ||||||||| ||||||||||| |||| | |||||||||| |||||| |||||  ||||   ||||||||||||||||||||    
T  31632514 ttaacagcccaaacaaacggaggggg-gcaattgactaacgtttgacaattt--aggagggttttgaagtttcttaaaaat 31632437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 284 - 399
Target Start/End: Complemental strand, 49681402 - 49681288
Alignment:
Q  284 agtcacttaacagccaaaacaaacggaaggggagtaattgactaaagtttgataatttcaaggaaatttttgaagtttcttaaaaattaaggg-gttttt 382  Q
    ||||| |||||||||||||||||||| |||||| ||||| ||||  |||||| |||||||  |   ||||||||||||  ||||||| | ||| ||||||    
T  49681402 agtcatttaacagccaaaacaaacgg-agggga-taattaactagcgtttgacaatttcagaggggtttttgaagttttctaaaaatcaggggagttttt 49681305  T
Q  383 gacgaaagttacaattt 399  Q
    ||| |||| ||||||||    
T  49681304 gacaaaagctacaattt 49681288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 373 - 401
Target Start/End: Complemental strand, 52896357 - 52896329
Alignment:
Q  373 aggggtttttgacgaaagttacaatttca 401  Q
    |||||||||||||||||||||||||||||    
T  52896357 aggggtttttgacgaaagttacaatttca 52896329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 377 - 405
Target Start/End: Complemental strand, 55978522 - 55978494
Alignment:
Q  377 gtttttgacgaaagttacaatttcagggg 405  Q
    |||||||||||||||||||||||||||||    
T  55978522 gtttttgacgaaagttacaatttcagggg 55978494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 127; Significance: 2e-65; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 24 - 187
Target Start/End: Original strand, 47445501 - 47445660
Alignment:
Q  24 ataacccttgttctttttccaacaagttcatgatcttttctgttattctttctgttgttgataaattccaaagggttgttgttgattaattcaagaaggt 123  Q
    |||| ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  47445501 ataaaccttgttctttttccaacaagttcatgattttttctgttattcattctgttgttgatgaattccaaagggttgttgttgattaattcaagaaggt 47445600  T
Q  124 aacaaacaagagagatagagagaatcattagaaagtgtgtgatgttgatgatgatgttgttgtt 187  Q
    ||||||||||||    |||||||||||||||||| |||||||||||||||||||||||||||||    
T  47445601 aacaaacaagag----agagagaatcattagaaaatgtgtgatgttgatgatgatgttgttgtt 47445660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 284 - 403
Target Start/End: Complemental strand, 27585429 - 27585312
Alignment:
Q  284 agtcacttaacagccaaaacaaacggaaggggagtaattgactaaagtttgataatttcaaggaaatttttgaagtttcttaaaaattaaggggtttttg 383  Q
    ||||| ||||||||||||||||||| | |||| ||||| |||||| |||||| ||||||| ||   ||||||||||||||||||||||  ||| ||||||    
T  27585429 agtcatttaacagccaaaacaaacgaatgggg-gtaatcgactaacgtttgacaatttcaggggg-tttttgaagtttcttaaaaattgggggatttttg 27585332  T
Q  384 acgaaagttacaatttcagg 403  Q
    ||||||| ||||||||||||    
T  27585331 acgaaaggtacaatttcagg 27585312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 283 - 402
Target Start/End: Original strand, 47445769 - 47445889
Alignment:
Q  283 tagtcacttaacagccaaaacaaacggaaggggagtaattgactaaagtttgataatttcaaggaaatttttgaagtttcttaaaaattaagggg--ttt 380  Q
    |||||| |||||| |||||||||| ||| |||| |||||||||||| |||||||||||||| ||   ||||||||||||||||||||| | ||||  |||    
T  47445769 tagtcatttaacaaccaaaacaaatggaggggg-gtaattgactaacgtttgataatttcaggggtttttttgaagtttcttaaaaatcaggggggattt 47445867  T
Q  381 ttgacgaaagttacaatttcag 402  Q
    |||| |||| ||||||||||||    
T  47445868 ttgatgaaaattacaatttcag 47445889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 284 - 403
Target Start/End: Original strand, 36475966 - 36476085
Alignment:
Q  284 agtcacttaacagccaaaacaaacggaaggggagtaattgactaaagtttgataatttcaaggaaatttttgaagtttcttaaaaatta-aggggttttt 382  Q
    ||||| ||||||||||||||||| ||| |||| |||||||||||| |||| | ||||||| ||   ||||||||||||||||||| ||| |  || ||||    
T  36475966 agtcatttaacagccaaaacaaatggaggggg-gtaattgactaacgtttaacaatttcatgggggtttttgaagtttcttaaaagttagatagggtttt 36476064  T
Q  383 gacgaaagttacaatttcagg 403  Q
    |||||||||||||||||||||    
T  36476065 gacgaaagttacaatttcagg 36476085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 285 - 401
Target Start/End: Complemental strand, 36475411 - 36475295
Alignment:
Q  285 gtcacttaacagccaaaacaaacggaaggggagtaattgactaaagtttgataatttcaaggaaatttttgaagtttcttaaaaattaagg--ggttttt 382  Q
    |||| ||||||||||||||||||||| ||||  ||||||||||| |||| | ||||||| ||    |||||||||||||||||||| | ||  | |||||    
T  36475411 gtcatttaacagccaaaacaaacggaggggg--taattgactaacgtttaacaatttcagggtttcttttgaagtttcttaaaaatcatggaagtttttt 36475314  T
Q  383 gacgaaagttacaatttca 401  Q
    |||||||||||||||||||    
T  36475313 gacgaaagttacaatttca 36475295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 290 - 405
Target Start/End: Complemental strand, 47445122 - 47445007
Alignment:
Q  290 ttaacagccaaaacaaacggaaggggagtaattgactaaagtttgataatttcaaggaaatttttgaagtttcttaaaaattaaggggt-ttttgacgaa 388  Q
    ||||||||||||| ||||||| |||| |||||||||||| |||||| ||||||| ||   ||||||||||||| | ||||| | ||||  ||||||||||    
T  47445122 ttaacagccaaaataaacggaggggg-gtaattgactaacgtttgacaatttcatgggggtttttgaagtttcctgaaaatcagggggggttttgacgaa 47445024  T
Q  389 agttacaatttcagggg 405  Q
    || ||||||||||||||    
T  47445023 agctacaatttcagggg 47445007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 311 - 367
Target Start/End: Original strand, 26991038 - 26991094
Alignment:
Q  311 aggggagtaattgactaaagtttgataatttcaaggaaatttttgaagtttcttaaa 367  Q
    |||||||||||||| ||| |||||| ||||| | |||| ||||||||||||||||||    
T  26991038 aggggagtaattgattaacgtttgacaattttagggaagtttttgaagtttcttaaa 26991094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 374 - 405
Target Start/End: Original strand, 11343419 - 11343450
Alignment:
Q  374 ggggtttttgacgaaagttacaatttcagggg 405  Q
    ||||||||||||||||||||||||||||||||    
T  11343419 ggggtttttgacgaaagttacaatttcagggg 11343450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 374 - 405
Target Start/End: Original strand, 11501439 - 11501470
Alignment:
Q  374 ggggtttttgacgaaagttacaatttcagggg 405  Q
    ||||||||||||||||||||||||||||||||    
T  11501439 ggggtttttgacgaaagttacaatttcagggg 11501470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 374 - 405
Target Start/End: Complemental strand, 14282830 - 14282799
Alignment:
Q  374 ggggtttttgacgaaagttacaatttcagggg 405  Q
    ||||||||||||||||||||||||||||||||    
T  14282830 ggggtttttgacgaaagttacaatttcagggg 14282799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 374 - 405
Target Start/End: Original strand, 14284258 - 14284289
Alignment:
Q  374 ggggtttttgacgaaagttacaatttcagggg 405  Q
    ||||||||||||||||||||||||||||||||    
T  14284258 ggggtttttgacgaaagttacaatttcagggg 14284289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 290 - 401
Target Start/End: Original strand, 27585987 - 27586096
Alignment:
Q  290 ttaacagccaaaacaaacggaaggggagtaattgactaaagtttgataatttcaaggaaatttttgaagtttcttaaaaattaagggg--tttttgacga 387  Q
    |||||||||| |||||| ||| ||||  ||||||||||| |||| | ||||||| |||  ||||||||||||||||||| | | ||||  ||||| ||||    
T  27585987 ttaacagccataacaaatggaggggg--taattgactaacgtttaacaatttca-ggagttttttgaagtttcttaaaagt-atggggattttttaacga 27586082  T
Q  388 aagttacaatttca 401  Q
    ||||||||||||||    
T  27586083 aagttacaatttca 27586096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 374 - 405
Target Start/End: Original strand, 38482531 - 38482562
Alignment:
Q  374 ggggtttttgacgaaagttacaatttcagggg 405  Q
    ||||||||||||||||||||||||||||||||    
T  38482531 ggggtttttgacgaaagttacaatttcagggg 38482562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 401
Target Start/End: Complemental strand, 45576061 - 45575952
Alignment:
Q  290 ttaacagccaaaacaaacggaaggggagtaattgactaaagtttgataatttcaaggaaatttttgaagtttcttaaaaattaagggg-tttttgacgaa 388  Q
    |||| |||| ||||||||||| ||||  ||||||||||| |||||| ||||| | || | |||| ||||||| |||||||| | |||| |||||||||||    
T  45576061 ttaatagcccaaacaaacggaggggg--taattgactaacgtttgacaattttatgggagtttt-gaagttttttaaaaatcatgggggtttttgacgaa 45575965  T
Q  389 agttacaatttca 401  Q
    | || ||||||||    
T  45575964 actttcaatttca 45575952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 318 - 370
Target Start/End: Complemental strand, 786843 - 786791
Alignment:
Q  318 taattgactaaagtttgataatttcaaggaaatttttgaagtttcttaaaaat 370  Q
    ||||||||||| |||||||||||| | ||   |||||||||||||||||||||    
T  786843 taattgactaacgtttgataattttatggggttttttgaagtttcttaaaaat 786791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 374 - 402
Target Start/End: Original strand, 42813860 - 42813888
Alignment:
Q  374 ggggtttttgacgaaagttacaatttcag 402  Q
    |||||||||||||||||||||||||||||    
T  42813860 ggggtttttgacgaaagttacaatttcag 42813888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102 (Bit Score: 123; Significance: 5e-63; HSPs: 3)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 21 - 184
Target Start/End: Complemental strand, 32761 - 32602
Alignment:
Q  21 atcataacccttgttctttttccaacaagttcatgatcttttctgttattctttctgttgttgataaattccaaagggttgttgttgattaattcaagaa 120  Q
    ||||||| ||||||||||||||||||||||||||||| |||||| |||||| ||||||||||||| |||| |||||||||||||||||||||||||||||    
T  32761 atcataaaccttgttctttttccaacaagttcatgatattttctattattcattctgttgttgatgaatttcaaagggttgttgttgattaattcaagaa 32662  T
Q  121 ggtaacaaacaagagagatagagagaatcattagaaagtgtgtgatgttgatgatgatgttgtt 184  Q
    |||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||    
T  32661 ggtaacaaacaagag----agagagaatcattagaaagtgtgtgatgttgatgatgatgttgtt 32602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 283 - 403
Target Start/End: Complemental strand, 32493 - 32372
Alignment:
Q  283 tagtcacttaacagccaaaacaaacggaaggggagtaattgactaaagtttgataatttca-aggaaatttttgaagtttcttaaaaatta-aggggttt 380  Q
    |||||| |||||||||||||||||||||  ||| || ||||||||| |||||||||||||  |||   ||||||||||||||||||||| | |||| |||    
T  32493 tagtcatttaacagccaaaacaaacggagaggg-gttattgactaacgtttgataatttccgagggggtttttgaagtttcttaaaaatcagagggattt 32395  T
Q  381 ttgacgaaagttacaatttcagg 403  Q
    |||||||||||||||||||||||    
T  32394 ttgacgaaagttacaatttcagg 32372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 283 - 401
Target Start/End: Original strand, 33138 - 33257
Alignment:
Q  283 tagtcacttaacagccaaaacaaacggaaggggagtaattgactaaagtttgataatttcaaggaaattttt-gaagtttcttaaaaattaaggg-gttt 380  Q
    |||||| |||||||||||||||||||| ||||| |||||||||||| |||||| ||||||| ||   ||||| |||||||| ||||||| | ||| ||||    
T  33138 tagtcatttaacagccaaaacaaacgg-aggggggtaattgactaacgtttgacaatttcaggggggtttttggaagtttcctaaaaatcaggggagttt 33236  T
Q  381 ttgacgaaagttacaatttca 401  Q
    || ||||||| ||||||||||    
T  33237 tttacgaaagctacaatttca 33257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 110; Significance: 3e-55; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 21 - 146
Target Start/End: Complemental strand, 36067724 - 36067599
Alignment:
Q  21 atcataacccttgttctttttccaacaagttcatgatcttttctgttattctttctgttgttgataaattccaaagggttgttgttgattaattcaagaa 120  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  36067724 atcataaaccttgttctttttccaacaagttcatgatcttttctgttattcattctgttgttgatgaattccaaagggttgttgttgattaattcaagaa 36067625  T
Q  121 ggtaacaaacaagagagatagagaga 146  Q
    |||||||||||||||||| |||||||    
T  36067624 ggtaacaaacaagagagagagagaga 36067599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 291 - 405
Target Start/End: Original strand, 3987239 - 3987352
Alignment:
Q  291 taacagccaaaacaaacggaaggggagtaattgactaaagtttgataatttcaaggaaatttttgaagtttcttaaaaattaag-gggtttttgacgaaa 389  Q
    |||||||||||||||||||| ||||  ||||||||||| |||||| ||||||||||   ||||| ||||||||||||||| | | || ||||||||||||    
T  3987239 taacagccaaaacaaacggaggggg--taattgactaacgtttgacaatttcaaggtttttttttaagtttcttaaaaatcaggaggatttttgacgaaa 3987336  T
Q  390 gttacaatttcagggg 405  Q
    ||||||||||||||||    
T  3987337 gttacaatttcagggg 3987352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 283 - 401
Target Start/End: Original strand, 30480689 - 30480808
Alignment:
Q  283 tagtcacttaacagccaaaa-caaacggaaggggagtaattgactaaagtttgataatttcaaggaaatttttgaagtttcttaaaaattaaggg-gttt 380  Q
    |||||| ||||||||||||| |||||||| ||||| ||||||||||| |||||| |||||||||| | |||||||||| |||||||||| |||||  |||    
T  30480689 tagtcatttaacagccaaaaccaaacggaggggga-taattgactaacgtttgacaatttcaagggattttttgaagtatcttaaaaatcaagggaattt 30480787  T
Q  381 ttgacgaaagttacaatttca 401  Q
    || ||||||||||||||||||    
T  30480788 tttacgaaagttacaatttca 30480808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 290 - 400
Target Start/End: Original strand, 32390892 - 32391000
Alignment:
Q  290 ttaacagccaaaacaaacggaaggggagtaattgactaaagtttgataatttcaaggaaatttttgaagtttcttaaaaattaaggggtttttgacgaaa 389  Q
    ||||||| ||||||||||||| |||| |||||||||||| ||||||||||||| |||  |||||||||||||||||||  | | |||| ||||||||||     
T  32390892 ttaacagtcaaaacaaacggaggggg-gtaattgactaacgtttgataatttc-aggggatttttgaagtttcttaaatgtcaggggggttttgacgaat 32390989  T
Q  390 gttacaatttc 400  Q
    | |||||||||    
T  32390990 gctacaatttc 32391000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 299 - 399
Target Start/End: Complemental strand, 6733141 - 6733042
Alignment:
Q  299 aaaacaaacggaaggggagtaattgactaaagtttgataatttcaaggaaatttttgaagtttcttaaaaattaaggggtttttgacgaaagttacaatt 398  Q
    |||||||||||| | ||| ||||||||||| |||| | ||||||| || | |||||||||||| |||||| | | |||||||||||||||||||| ||||    
T  6733141 aaaacaaacggaggagga-taattgactaacgtttaacaatttcatgggagtttttgaagttttttaaaagtcagggggtttttgacgaaagttataatt 6733043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 295 - 402
Target Start/End: Original strand, 36068113 - 36068220
Alignment:
Q  295 agccaaaacaaacggaaggggagtaattgactaaagtttgataatttcaaggaaatttttgaagtttcttaaaaattaagggg-tttttgacgaaagtta 393  Q
    |||||||||||||||| |||| ||||||||||||  ||||| ||||||| ||   |||||||| |||| ||||||| | |||| ||||||||||||| ||    
T  36068113 agccaaaacaaacggaggggg-gtaattgactaacatttgacaatttcagggggttttttgaaatttcctaaaaatcagggggttttttgacgaaagcta 36068211  T
Q  394 caatttcag 402  Q
    |||||||||    
T  36068212 caatttcag 36068220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 290 - 405
Target Start/End: Complemental strand, 41589315 - 41589203
Alignment:
Q  290 ttaacagccaaaacaaacggaaggggagtaattgactaaagtttgataatttcaaggaaatttttgaagtttcttaaaaattaaggggtttttgacgaaa 389  Q
    |||||||||||||||||| || ||||  ||||||||||| ||||||||||| | |||   |||||||| |||||| ||| ||| |  ||||||| || ||    
T  41589315 ttaacagccaaaacaaacagaggggg--taattgactaacgtttgataatt-ctaggttttttttgaaatttctttaaagttaggaagtttttggcggaa 41589219  T
Q  390 gttacaatttcagggg 405  Q
    ||||||||||||||||    
T  41589218 gttacaatttcagggg 41589203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 283 - 403
Target Start/End: Complemental strand, 36067435 - 36067317
Alignment:
Q  283 tagtcacttaacagccaaaacaaacggaaggggagtaattgactaaagtttgataatttcaaggaaatttttgaagtttcttaaaaattaaggggt-ttt 381  Q
    |||||| ||||| ||||||| ||||||| ||||  ||||||||||| |||| ||| ||||| ||   ||||| || |||||||||||| | ||||  |||    
T  36067435 tagtcatttaacggccaaaataaacggaggggg--taattgactaatgtttaata-tttcagggggttttttaaaatttcttaaaaatcaggggggattt 36067339  T
Q  382 tgacgaaagttacaatttcagg 403  Q
    ||||||||||||||||||||||    
T  36067338 tgacgaaagttacaatttcagg 36067317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 290 - 402
Target Start/End: Original strand, 6733140 - 6733250
Alignment:
Q  290 ttaacagccaaaacaaacggaaggggagtaattgactaaagtttgataatttcaaggaaatttttgaagtttcttaaaaattaagg-ggtttttgacgaa 388  Q
    ||||||||||||| ||||| |||||| ||||||| |||| |||||| |||||||| |   ||||| ||||||||||||||| | ||   |||||||||||    
T  6733140 ttaacagccaaaataaacg-aagggg-gtaattggctaacgtttgacaatttcaaagtttttttt-aagtttcttaaaaatcagggttttttttgacgaa 6733236  T
Q  389 agttacaatttcag 402  Q
    ||||||||||||||    
T  6733237 agttacaatttcag 6733250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 150 - 187
Target Start/End: Complemental strand, 36067581 - 36067544
Alignment:
Q  150 attagaaagtgtgtgatgttgatgatgatgttgttgtt 187  Q
    |||||||||||||||||||||| |||||||||||||||    
T  36067581 attagaaagtgtgtgatgttgaagatgatgttgttgtt 36067544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 374 - 405
Target Start/End: Complemental strand, 31285520 - 31285489
Alignment:
Q  374 ggggtttttgacgaaagttacaatttcagggg 405  Q
    ||||||||||||||||||||||||||||||||    
T  31285520 ggggtttttgacgaaagttacaatttcagggg 31285489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 374 - 405
Target Start/End: Original strand, 31286930 - 31286961
Alignment:
Q  374 ggggtttttgacgaaagttacaatttcagggg 405  Q
    ||||||||||||||||||||||||||||||||    
T  31286930 ggggtttttgacgaaagttacaatttcagggg 31286961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 403
Target Start/End: Original strand, 35394776 - 35394805
Alignment:
Q  374 ggggtttttgacgaaagttacaatttcagg 403  Q
    ||||||||||||||||||||||||||||||    
T  35394776 ggggtttttgacgaaagttacaatttcagg 35394805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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