View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21440_low_80 (Length: 205)
Name: NF21440_low_80
Description: NF21440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21440_low_80 |
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Alignment Details
Target: chr2 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 19 - 189
Target Start/End: Complemental strand, 44692517 - 44692347
Alignment:
| Q |
19 |
actccaccaccggcccattattcacccccatattcgccaccatagcctctttttggtttgacatagagaacaatctaggatatttacctcgaaagggaac |
118 |
Q |
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| T |
44692517 |
actccaccaccggcccattattcacccccatattcgccaccatagcctctttttggtttgacatagagaacaatctagaatatttacctcgaaagggaac |
44692418 |
T |
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| Q |
119 |
tccacccctccatctcgcataccaaaacttagtattaaccccgttcctcaccttcctagccacctcttcat |
189 |
Q |
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| T |
44692417 |
tccacccctccatctcgcataccaaaacttagtattaaccccgttcctcaccttcctagccacctcttcat |
44692347 |
T |
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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 104
Target Start/End: Original strand, 34866692 - 34866777
Alignment:
| Q |
19 |
actccaccaccggcccattattcacccccatattcgccaccatagcctctttttggtttgacatagagaacaatctaggatattta |
104 |
Q |
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| T |
34866692 |
actccaccatcggaccggtattcaccccaatctccgcaaccaatgcctctttttggttcgacatagagaataatctaggatattta |
34866777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 48 - 130
Target Start/End: Complemental strand, 12830121 - 12830039
Alignment:
| Q |
48 |
atattcgccaccatagcctctttttggtttgacatagagaacaatctaggatatttacctcgaaagggaactccacccctcca |
130 |
Q |
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| T |
12830121 |
atatccgccaccattgcctctttttggtttaacattgcgaataatcttggatatttatcacggaaggcaacaccacccctcca |
12830039 |
T |
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