View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21440_low_81 (Length: 204)
Name: NF21440_low_81
Description: NF21440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21440_low_81 |
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Alignment Details
Target: chr5 (Bit Score: 176; Significance: 5e-95; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 37319089 - 37319272
Alignment:
| Q |
1 |
acagtaacatggatgttgcacttcttaaccgaagtgggatcataatcaatgctcttggaagcgataaagttgtttccaaattgtttaactcgttgtctaa |
100 |
Q |
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| T |
37319089 |
acagtaacgtggatgttgcacttcttaaccgaagtgggatcataatcaatgctcttggaagcgataaagttgtttccaaattgtttaactcgttgtctaa |
37319188 |
T |
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| Q |
101 |
agacataacagtggatcgtcatggagtacttggtgtggtgaggatgagtatgagtgattactgcaagaaaccgtggaaaagatg |
184 |
Q |
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| T |
37319189 |
agacataacagtggatcgtcatggagtacttgatgtggtgaggatgagtatgagtgattactgcaagaaaccgtggaaaagatg |
37319272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 181
Target Start/End: Original strand, 37283356 - 37283522
Alignment:
| Q |
15 |
gttgcacttcttaaccgaagtgggatcataatcaatgctcttggaagcgataaagttgtttccaaattgtttaactcgttgtctaaagacataacagtgg |
114 |
Q |
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| T |
37283356 |
gttgcaattctcatccgaagtgggatcataatcaactatcttgagagtgacaaagctgttgccaaattgttcaactccttggcaaaagaaatcccaatgg |
37283455 |
T |
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| Q |
115 |
atcgtcatggagtacttggtgtggtgaggatgagtatgagtgattactgcaagaaaccgtggaaaag |
181 |
Q |
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| T |
37283456 |
atcgtgaaggagaacttgaagaggtgacaaagagtatgatttcttactgtaagaagccgtggaaaag |
37283522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 91
Target Start/End: Original strand, 37244910 - 37244970
Alignment:
| Q |
31 |
gaagtgggatcataatcaatgctcttggaagcgataaagttgtttccaaattgtttaactc |
91 |
Q |
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| T |
37244910 |
gaagtgggatcctaatcaacgctcttgggaacgataaacttgtggccaaattgttcaactc |
37244970 |
T |
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