View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21440_low_9 (Length: 474)

Name: NF21440_low_9
Description: NF21440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21440_low_9
NF21440_low_9
[»] chr1 (5 HSPs)
chr1 (263-459)||(9302883-9303079)
chr1 (272-453)||(8769118-8769301)
chr1 (97-159)||(9303183-9303245)
chr1 (97-138)||(8769438-8769479)
chr1 (264-338)||(17018891-17018967)
[»] chr5 (10 HSPs)
chr5 (264-451)||(28675921-28676112)
chr5 (263-448)||(16566296-16566483)
chr5 (263-411)||(16564465-16564616)
chr5 (263-401)||(19071761-19071901)
chr5 (274-452)||(15396887-15397070)
chr5 (263-323)||(27586825-27586886)
chr5 (370-452)||(28702456-28702537)
chr5 (105-142)||(25527414-25527451)
chr5 (293-401)||(38384738-38384847)
chr5 (106-138)||(28702362-28702394)
[»] scaffold0193 (1 HSPs)
scaffold0193 (263-448)||(18314-18501)
[»] chr2 (9 HSPs)
chr2 (263-448)||(45026266-45026456)
chr2 (328-448)||(20472247-20472368)
chr2 (263-355)||(17881339-17881432)
chr2 (263-402)||(32129424-32129564)
chr2 (264-452)||(18983461-18983649)
chr2 (264-402)||(23174366-23174506)
chr2 (264-402)||(23585623-23585763)
chr2 (97-138)||(45026587-45026628)
chr2 (97-133)||(32129700-32129736)
[»] chr4 (4 HSPs)
chr4 (268-448)||(12612672-12612854)
chr4 (263-323)||(20355851-20355912)
chr4 (97-137)||(18482138-18482178)
chr4 (97-137)||(20356040-20356080)
[»] scaffold2020 (1 HSPs)
scaffold2020 (264-452)||(584-772)
[»] scaffold0009 (2 HSPs)
scaffold0009 (264-452)||(164723-164911)
scaffold0009 (297-411)||(149575-149691)
[»] scaffold0226 (2 HSPs)
scaffold0226 (263-411)||(6598-6749)
scaffold0226 (97-142)||(6425-6470)
[»] chr8 (4 HSPs)
chr8 (263-401)||(17809451-17809591)
chr8 (263-402)||(24710016-24710157)
chr8 (105-142)||(22155795-22155832)
chr8 (105-142)||(22161803-22161840)
[»] chr3 (8 HSPs)
chr3 (263-397)||(20742487-20742622)
chr3 (264-402)||(10708714-10708852)
chr3 (263-322)||(15749370-15749430)
chr3 (266-397)||(20734950-20735082)
chr3 (97-135)||(20742756-20742794)
chr3 (105-142)||(16030147-16030184)
chr3 (264-348)||(23280834-23280919)
chr3 (264-348)||(23286733-23286818)
[»] scaffold0063 (1 HSPs)
scaffold0063 (263-410)||(32701-32852)
[»] chr7 (1 HSPs)
chr7 (264-402)||(11586796-11586937)
[»] chr6 (6 HSPs)
chr6 (264-429)||(14483591-14483757)
chr6 (268-452)||(15646455-15646644)
chr6 (264-345)||(5269033-5269115)
chr6 (105-138)||(2890363-2890396)
chr6 (355-402)||(13541767-13541816)
chr6 (104-159)||(14483852-14483912)
[»] scaffold0058 (1 HSPs)
scaffold0058 (264-411)||(68547-68695)
[»] scaffold0555 (1 HSPs)
scaffold0555 (265-344)||(3866-3946)
[»] scaffold0236 (1 HSPs)
scaffold0236 (264-344)||(26906-26987)


Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 263 - 459
Target Start/End: Complemental strand, 9303079 - 9302883
Alignment:
Q  263 gcaagaggttcctatagagtactatagacgtttaggtggtaataccttctctttacgtaactaatccccggaccttaaatctcttataattgtgggttta 362  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9303079 gcaagaggttcctatagagtactatagacgtttaggtggtaataccttctctttacgtaactaatccccggaccttaaatctcttataattgtgggttta 9302980  T
Q  363 ctcgaacttttcccctttcccttgaaaaaattaaagctcgatagtgaatcctgaatttctgagtcaatgttgatcaatagcttgatatccacaattc 459  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  9302979 ctcgaacttttcccctttcccttgaaaaaattaaagctcgatagtgaatcctgaatttctgagtcaatgttaatcaatagcttgatatccacaattc 9302883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 272 - 453
Target Start/End: Complemental strand, 8769301 - 8769118
Alignment:
Q  272 tcctatagagtactatagacgttta-ggtggtaataccttctctttacgtaactaatccccggaccttaaatctcttataattgtgggtttactcgaac- 369  Q
    ||||||||| || |||||||||||| |||| ||||||||||||||||||||||||| || || |||||||||| || | |||| |||||||| ||||||     
T  8769301 tcctatagaatattatagacgtttaaggtgataataccttctctttacgtaactaaccctcgaaccttaaatcactaaaaattatgggtttattcgaact 8769202  T
Q  370 ttttcccctttccctt-gaaaaaattaaagctcgatagtgaatcctgaatttctgagtcaatgttgatcaatagcttgatatcca 453  Q
    |||||||||||||||| ||||||||||||||||||| || || ||| ||||| |||||||  | | |||||||||||||| ||||    
T  8769201 ttttcccctttcccttagaaaaaattaaagctcgatggt-aaacctaaatttatgagtcatcgctaatcaatagcttgatctcca 8769118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 97 - 159
Target Start/End: Complemental strand, 9303245 - 9303183
Alignment:
Q  97 cactcggctttttacaccgaactacgtggttttgatccctcatgggaggcaaaagactttgtc 159  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9303245 cactcggctttttacaccgaactacgtggttttgatccctcatgggaggcaaaagactttgtc 9303183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 138
Target Start/End: Complemental strand, 8769479 - 8769438
Alignment:
Q  97 cactcggctttttacaccgaactacgtggttttgatccctca 138  Q
    |||| |||||||||| ||||||||||| ||||||||||||||    
T  8769479 cacttggctttttaccccgaactacgtagttttgatccctca 8769438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 264 - 338
Target Start/End: Original strand, 17018891 - 17018967
Alignment:
Q  264 caagaggttcctatagagtactatagacgtttaggtgg--taataccttctctttacgtaactaatccccggacctt 338  Q
    |||||| |||||||||| ||| |||||||||||||  |  ||| ||||||||||| |||||| || |||||||||||    
T  17018891 caagagcttcctatagaataccatagacgtttagggtgcttaaaaccttctctttgcgtaaccaacccccggacctt 17018967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 81; Significance: 6e-38; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 264 - 451
Target Start/End: Original strand, 28675921 - 28676112
Alignment:
Q  264 caagaggttcctatagagtactatagacgtttagg-tggtaataccttctctttacgtaactaatccccggaccttaaatctctta--taattgtgg-gt 359  Q
    ||||||||||||||||||||||||||||||||||| || ||||| ||||  ||||||||||||| ||||| |||||||||||||||  |||||||||  |    
T  28675921 caagaggttcctatagagtactatagacgtttaggatgctaatatcttccttttacgtaactaacccccgaaccttaaatctcttatttaattgtggatt 28676020  T
Q  360 ttactcgaacttttcccctttcccttgaaaaaattaaagctcgatagtgaatcctgaatttctgagtcaatgttgatcaatagcttgatatc 451  Q
    ||| |||||||||||||| |||||||| || |||||||||||  | ||||||||| ||||| ||||| || |   |||||||||||||||||    
T  28676021 ttattcgaacttttcccccttcccttggaagaattaaagctctgtggtgaatcctaaatttgtgagttaacgccaatcaatagcttgatatc 28676112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 263 - 448
Target Start/End: Original strand, 16566296 - 16566483
Alignment:
Q  263 gcaagaggttcctatagagtactatagacgttta-ggtggtaataccttctctttacgtaactaatccccggaccttaaatctcttataattgtgggttt 361  Q
    |||||||||||||||||| |||| |||||||||| |||| |||||||||| |||||| ||||||||||||| ||||||||||||| | |||||| | |||    
T  16566296 gcaagaggttcctatagaatactctagacgtttatggtgctaataccttccctttacctaactaatccccgaaccttaaatctctaaaaattgt-gattt 16566394  T
Q  362 actcgaacttttc-ccctttccctt-gaaaaaattaaagctcgatagtgaatcctgaatttctgagtcaatgttgatcaatagcttgat 448  Q
    | ||||||||||| ||||||||||| ||||||||||||||||| | ||||||    ||||| |||||||| | | |||||||| |||||    
T  16566395 attcgaacttttctccctttcccttggaaaaaattaaagctcggtggtgaattaaaaatttgtgagtcaacgctaatcaataggttgat 16566483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 263 - 411
Target Start/End: Original strand, 16564465 - 16564616
Alignment:
Q  263 gcaagaggttcctatagagtactatagacgtttagg-tggtaataccttctctttacgtaactaatccccggaccttaaatctcttataattgtgggttt 361  Q
    |||| ||||||||||||| ||  ||||||||||||| || |||| ||||| |||||||||||||| ||||  ||||||||||||| | ||||||||||||    
T  16564465 gcaataggttcctatagaatatcatagacgtttaggatgctaatcccttccctttacgtaactaacccccaaaccttaaatctctaacaattgtgggttt 16564564  T
Q  362 actcgaac-ttttcccctttccctt-gaaaaaattaaagctcgatagtgaat 411  Q
    | |||||| |||||||||||||||| ||||||||||||||||| | ||||||    
T  16564565 attcgaactttttcccctttcccttggaaaaaattaaagctcggtggtgaat 16564616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 263 - 401
Target Start/End: Original strand, 19071761 - 19071901
Alignment:
Q  263 gcaagaggttcctatagagtactatagacgtttaggtgg-taataccttctctttacgtaactaatccccggaccttaaatctcttataattgtgggttt 361  Q
    ||||| |||||||||||||||||||||||||||||| || |||||||||| |||| |||||| || ||||| ||||| ||||||||| | |   ||||||    
T  19071761 gcaaggggttcctatagagtactatagacgtttagggggctaataccttccctttgcgtaaccaacccccgaacctttaatctcttaaagtatagggttt 19071860  T
Q  362 actcgaacttttcccctttcccttg-aaaaaattaaagctc 401  Q
    | || |||||||||||||| ||||| ||||||| |||||||    
T  19071861 attcaaacttttccccttttccttgtaaaaaataaaagctc 19071901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 274 - 452
Target Start/End: Original strand, 15396887 - 15397070
Alignment:
Q  274 ctatagagtactatagacgtttagg-tggtaataccttctctttacgtaactaatccccggaccttaaatctcttat---aattgtgggttt-actcgaa 368  Q
    ||||||||||||||||||||||||| || | |||| ||  ||| ||| |||||| ||||| ||||||||||||||||   || ||||||||| | |||||    
T  15396887 ctatagagtactatagacgtttagggtgctgatacatttccttcacgcaactaacccccgaaccttaaatctcttattttaaatgtgggttttattcgaa 15396986  T
Q  369 cttttcccctttcccttgaaaaaattaaagctcgatagtgaatcctgaatttctgagtcaatgttgatcaatagcttgatatcc 452  Q
    |||||  |  ||| |||||||||||||||  ||| | ||||||||| | ||| |||||||||| | | ||||||||||||||||    
T  15396987 cttttttctcttctcttgaaaaaattaaacgtcggtggtgaatcctaattttgtgagtcaatgctaagcaatagcttgatatcc 15397070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 263 - 323
Target Start/End: Original strand, 27586825 - 27586886
Alignment:
Q  263 gcaagaggttcctatagagtactatagacgttta-ggtggtaataccttctctttacgtaac 323  Q
    ||||||||||||||||||||||||||||| |||| |||| ||| |||||| |||| ||||||    
T  27586825 gcaagaggttcctatagagtactatagacatttagggtgctaacaccttccctttgcgtaac 27586886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 370 - 452
Target Start/End: Original strand, 28702456 - 28702537
Alignment:
Q  370 ttttcccctttcccttgaaaaaattaaagctcgatagtgaatcctgaatttctgagtcaatgttgatcaatagcttgatatcc 452  Q
    |||||||||| |||||| || |||||||||||  | ||||||||| ||||| ||||| || | | ||||||||||||||||||    
T  28702456 ttttcccctt-cccttggaagaattaaagctcagtggtgaatcctaaatttgtgagttaacgctaatcaatagcttgatatcc 28702537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 142
Target Start/End: Original strand, 25527414 - 25527451
Alignment:
Q  105 tttttacaccgaactacgtggttttgatccctcatggg 142  Q
    ||||||| |||||||||| |||||||||||||||||||    
T  25527414 tttttaccccgaactacgaggttttgatccctcatggg 25527451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 293 - 401
Target Start/End: Original strand, 38384738 - 38384847
Alignment:
Q  293 tttaggtggtaataccttctctttacgtaactaatccccggaccttaaatctcttataattgtgggtttactcgaacttttcccctttcccttg-aaaaa 391  Q
    |||||||| |||||| ||| ||| |||||||||| ||| | || || | ||||||| ||||  ||||||| || | ||||| |||||| ||||| |||||    
T  38384738 tttaggtgctaatacattcccttaacgtaactaacccctgaacttttattctcttaaaatttagggtttattccatctttttcccttttccttgaaaaaa 38384837  T
Q  392 attaaagctc 401  Q
    ||||||||||    
T  38384838 attaaagctc 38384847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 106 - 138
Target Start/End: Original strand, 28702362 - 28702394
Alignment:
Q  106 ttttacaccgaactacgtggttttgatccctca 138  Q
    |||||| ||||||||||||||||||||||||||    
T  28702362 ttttaccccgaactacgtggttttgatccctca 28702394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0193 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: scaffold0193
Description:

Target: scaffold0193; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 263 - 448
Target Start/End: Original strand, 18314 - 18501
Alignment:
Q  263 gcaagaggttcctatagagtactatagacgtttagg-tggtaataccttctctttacgtaactaatccccggaccttaaatctcttataattgtgggttt 361  Q
    |||||||||||||||||||||||||||| ||||||| || ||||||||||   |||||||||||| || || ||||||||||||| | ||||||||||||    
T  18314 gcaagaggttcctatagagtactatagatgtttagggtgctaataccttccacttacgtaactaaccctcgaaccttaaatctctaaaaattgtgggttt 18413  T
Q  362 actcgaac-ttttcccctttccc-ttgaaaaaattaaagctcgatagtgaatcctgaatttctgagtcaatgttgatcaatagcttgat 448  Q
    | |||||| |||||||| ||||| ||||||||||||||||||| | ||||| ||| ||||| | |||||| | | ||||||||||||||    
T  18414 attcgaactttttccccattccctttgaaaaaattaaagctcggtggtgaa-cctaaatttgtcagtcaacgctaatcaatagcttgat 18501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 4e-33; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 263 - 448
Target Start/End: Complemental strand, 45026456 - 45026266
Alignment:
Q  263 gcaagaggttcctatagagtactatagacgtttagg-tggtaataccttctctttacgtaactaatccccggaccttaaatctcttataattgtgggttt 361  Q
    |||||||||||||||| | || |||||||||||||| || |||||  |||  ||||||||||||| ||||| | ||||||||||| | ||||||||||||    
T  45026456 gcaagaggttcctataaaatattatagacgtttagggtgctaatatattccatttacgtaactaacccccgaaacttaaatctctaaaaattgtgggttt 45026357  T
Q  362 actcgaactttt-cccctttcccttg---aaaaaattaaagctcgatagtgaatcctgaatttctgagtcaatgttgatcaatagcttgat 448  Q
    | |||||||||| |||||||||||||   ||||||||||||||||   ||||||| | ||||| |||||||||| | ||||||||||||||    
T  45026356 attcgaacttttccccctttcccttgaaaaaaaaattaaagctcggcggtgaatcataaatttgtgagtcaatgctaatcaatagcttgat 45026266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 328 - 448
Target Start/End: Original strand, 20472247 - 20472368
Alignment:
Q  328 ccccggaccttaaatctcttataattgtggg-tttactcgaacttttcccctttcccttgaaaaaattaaagctcgatagtgaatcctgaatttctgagt 426  Q
    ||||| ||||||||||||||||||||||||| |||| |||||||||| ||  || ||||| |||||||||| |||||| ||||||||| ||||| |||||    
T  20472247 ccccgaaccttaaatctcttataattgtgggttttattcgaactttttcctctttccttggaaaaattaaaactcgatggtgaatcctaaatttgtgagt 20472346  T
Q  427 caatgttgatcaatagcttgat 448  Q
    ||| | | ||||||| ||||||    
T  20472347 caacgctaatcaataacttgat 20472368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 263 - 355
Target Start/End: Original strand, 17881339 - 17881432
Alignment:
Q  263 gcaagaggttcctatagagtactatagacgttta-ggtggtaataccttctctttacgtaactaatccccggaccttaaatctcttataattgt 355  Q
    |||||||||||||||||| ||||||||||||||| |||| |||||||||| | |||||||||||| | | | ||||||||||||| | ||||||    
T  17881339 gcaagaggttcctatagaatactatagacgtttagggtgctaataccttcccgttacgtaactaacctctgaaccttaaatctctaaaaattgt 17881432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 263 - 402
Target Start/End: Complemental strand, 32129564 - 32129424
Alignment:
Q  263 gcaagaggttcctatagagtactatagacgttt-aggtggtaataccttctctttacgtaactaatccccggaccttaaatctcttataattgtgggttt 361  Q
    ||||||||||| |||||||||||||||||||||  |||| ||||||||||  |||||||| | || ||||||||||| ||||||| | |||   ||||||    
T  32129564 gcaagaggttcttatagagtactatagacgtttggggtgctaataccttccttttacgtatccaa-ccccggacctttaatctctaaaaatatagggttt 32129466  T
Q  362 actcgaacttttcccctttccctt-gaaaaaattaaagctcg 402  Q
    | |||| |||||||| ||| |||| |||||||| ||||||||    
T  32129465 attcgatcttttcccattttccttggaaaaaataaaagctcg 32129424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 264 - 452
Target Start/End: Complemental strand, 18983649 - 18983461
Alignment:
Q  264 caagaggttcctatagagtactatagacgtttagg-tggtaataccttctctttacgtaactaatccccggaccttaaatctcttataattgtgggttta 362  Q
    ||||||||||||||||  ||||||||||| ||||| || |||||||||  ||| | ||||| || |||||||||||  |||||||| || |  ||||||     
T  18983649 caagaggttcctataggatactatagacgcttagggtgctaatacctttccttaatgtaaccaaaccccggacctttgatctcttaaaaata-gggtttt 18983551  T
Q  363 ctcgaacttttcccctttcccttgaaaaaattaaagctcgatagtgaatcctgaatttctgagtcaatgttgatcaatagcttgatatcc 452  Q
     || ||||| |||||||||||||| |||||||||||  |  | |||| || | ||||| |||||||| | | | ||||||||||||||||    
T  18983550 ttcaaacttctcccctttcccttggaaaaattaaagaaccgtggtgagtcataaatttgtgagtcaacgctaaccaatagcttgatatcc 18983461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 264 - 402
Target Start/End: Original strand, 23174366 - 23174506
Alignment:
Q  264 caagaggttcctatagagtactatagacgtttagg-tggtaataccttctctttacgtaactaatccccggaccttaaatctcttataattgtgggttta 362  Q
    ||||||||||||||| |||||||||||| |||||| |  |||||||||| ||| ||||||| || ||||| ||||| | ||||| | |||   |||||||    
T  23174366 caagaggttcctataaagtactatagacatttaggatcctaataccttcccttaacgtaaccaacccccgaacctttattctctcaaaatatagggttta 23174465  T
Q  363 ctcgaacttttcccct-ttcccttgaaaaaattaaagctcg 402  Q
     || ||||||||| || |||| | |||||||| ||||||||    
T  23174466 ttctaacttttcctctcttccttggaaaaaataaaagctcg 23174506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 264 - 402
Target Start/End: Original strand, 23585623 - 23585763
Alignment:
Q  264 caagaggttcctatagagtactatagacgtttagg-tggtaataccttctctttacgtaactaatccccggaccttaaatctcttataattgtgggttta 362  Q
    ||||||||||||||| |||||||||||| |||||| |  |||||||||| ||| ||||||| || ||||| ||||| | ||||| | |||   |||||||    
T  23585623 caagaggttcctataaagtactatagacatttaggatcctaataccttcccttaacgtaaccaacccccgaacctttattctctcaaaatatagggttta 23585722  T
Q  363 ctcgaacttttcccct-ttcccttgaaaaaattaaagctcg 402  Q
     || ||||||||| || |||| | |||||||| ||||||||    
T  23585723 ttctaacttttcctctcttccttggaaaaaataaaagctcg 23585763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 138
Target Start/End: Complemental strand, 45026628 - 45026587
Alignment:
Q  97 cactcggctttttacaccgaactacgtggttttgatccctca 138  Q
    ||||||||||||||| ||||| || |||||||||||||||||    
T  45026628 cactcggctttttaccccgaattaagtggttttgatccctca 45026587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 97 - 133
Target Start/End: Complemental strand, 32129736 - 32129700
Alignment:
Q  97 cactcggctttttacaccgaactacgtggttttgatc 133  Q
    ||||||||||||||| |||||||||||| ||||||||    
T  32129736 cactcggctttttaccccgaactacgtgattttgatc 32129700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 1e-32; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 268 - 448
Target Start/End: Complemental strand, 12612854 - 12612672
Alignment:
Q  268 aggttcctatagagtactatagacgtttagg-tggtaataccttctctttacgtaactaatccccggaccttaaatctcttataattgtgggtttactcg 366  Q
    ||||||||||||| ||||||||||||||||| || |||||  ||| |||||||||||||| ||||| || |||||||||| | || |||||||||| |||    
T  12612854 aggttcctatagaatactatagacgtttagggtgttaatattttccctttacgtaactaacccccgaactttaaatctctaaaaagtgtgggtttattcg 12612755  T
Q  367 aacttttcccc-tttcccttg-aaaaaattaaagctcgatagtgaatcctgaatttctgagtcaatgttgatcaatagcttgat 448  Q
    ||||||||||| ||||||||| |||||||||||||| | | ||||| ||| ||||| |||||||| | | ||||||||||||||    
T  12612754 aacttttccccatttcccttgaaaaaaattaaagcttggtggtgaa-cctaaatttgtgagtcaacgctaatcaatagcttgat 12612672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 323
Target Start/End: Complemental strand, 20355912 - 20355851
Alignment:
Q  263 gcaagaggttcctatagagtactatagacgttta-ggtggtaataccttctctttacgtaac 323  Q
    |||||||||| ||||||| ||||||||||||||| |||| ||| |||||| ||||| |||||    
T  20355912 gcaagaggtttctatagaatactatagacgtttatggtgttaaaaccttccctttaggtaac 20355851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 97 - 137
Target Start/End: Complemental strand, 18482178 - 18482138
Alignment:
Q  97 cactcggctttttacaccgaactacgtggttttgatccctc 137  Q
    |||||| ||||||||  ||||||||||||||||||||||||    
T  18482178 cactcgactttttacctcgaactacgtggttttgatccctc 18482138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 97 - 137
Target Start/End: Complemental strand, 20356080 - 20356040
Alignment:
Q  97 cactcggctttttacaccgaactacgtggttttgatccctc 137  Q
    |||||| |||||||| | |||||||||||||||||||||||    
T  20356080 cactcgcctttttacccagaactacgtggttttgatccctc 20356040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2020 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: scaffold2020
Description:

Target: scaffold2020; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 264 - 452
Target Start/End: Complemental strand, 772 - 584
Alignment:
Q  264 caagaggttcctatagagtactatagacgtttagg-tggtaataccttctctttacgtaactaatccccggaccttaaatctcttataattgtgggttta 362  Q
    ||||||||||||||||| || |||||||||||||| || ||| |||||| ||| ||||||| || | ||| ||||||||||||||  || ||||||||||    
T  772 caagaggttcctatagaataatatagacgtttagggtgctaacaccttcccttcacgtaaccaacctccgaaccttaaatctctttaaaatgtgggttta 673  T
Q  363 ctcgaacttttcccctttcccttgaaaaaa-ttaaagctcgatagtgaatcctgaatttctgagtcaatgttgatcaatagcttgatatcc 452  Q
     |||||||||||||||| |||||||||||| |||||||||| | ||||||    ||||| |||||||||  | ||||||||||||||||||    
T  672 ttcgaacttttcccctt-cccttgaaaaaaattaaagctcgctggtgaat-aaaaatttgtgagtcaatactaatcaatagcttgatatcc 584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 264 - 452
Target Start/End: Original strand, 164723 - 164911
Alignment:
Q  264 caagaggttcctatagagtactatagacgtttagg-tggtaataccttctctttacgtaactaatccccggaccttaaatctcttataattgtgggttta 362  Q
    ||||||||||||||||| || |||||||||||||| || ||| |||||| ||| ||||||| || | ||| ||||||||||||||  || ||||||||||    
T  164723 caagaggttcctatagaataatatagacgtttagggtgctaacaccttcccttcacgtaaccaacctccgaaccttaaatctctttaaaatgtgggttta 164822  T
Q  363 ctcgaacttttcccctttcccttg-aaaaaattaaagctcgatagtgaatcctgaatttctgagtcaatgttgatcaatagcttgatatcc 452  Q
     |||||||||||||| |||||||| |||||||||||||||| | ||||||    ||||| |||||||||  | ||||||||||||||||||    
T  164823 ttcgaacttttcccc-ttcccttgaaaaaaattaaagctcgctggtgaat-aaaaatttgtgagtcaatactaatcaatagcttgatatcc 164911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 297 - 411
Target Start/End: Original strand, 149575 - 149691
Alignment:
Q  297 ggtggtaataccttctctttacgtaactaatccccggaccttaaatctcttataattgtgggtttactcgaactttt-cccctttccctt-gaaaaaatt 394  Q
    |||| ||| |||||| ||| ||||| | || ||||| ||||||||||||||  || |||||||||| || ||||||| |||||||||||| |||||||||    
T  149575 ggtgctaacaccttcccttcacgtatccaaaccccgaaccttaaatctctttaaaatgtgggtttattcaaacttttccccctttcccttggaaaaaatt 149674  T
Q  395 aaagctcgatagtgaat 411  Q
    |||||||| | ||||||    
T  149675 aaagctcggtggtgaat 149691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0226 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: scaffold0226
Description:

Target: scaffold0226; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 263 - 411
Target Start/End: Original strand, 6598 - 6749
Alignment:
Q  263 gcaagaggttcctatagagtactatagacgtttag-gtggtaataccttctctttacgtaactaatccccggaccttaaatctcttataattgtgggttt 361  Q
    ||||||||||||| |||| |||||||||| ||||| ||  |||||||||| ||| |||||||||| ||||| ||||||||||||| | |||| |||||||    
T  6598 gcaagaggttcctttagaatactatagacatttagagtactaataccttcccttgacgtaactaacccccgaaccttaaatctctcaaaattatgggttt 6697  T
Q  362 actcgaactttt-cccctttccctt-gaaaaaattaaagctcgatagtgaat 411  Q
    |  |||| |||| ||||||||| || ||||||||||||||||| | ||||||    
T  6698 atccgaatttttacccctttccattggaaaaaattaaagctcggtggtgaat 6749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0226; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 142
Target Start/End: Original strand, 6425 - 6470
Alignment:
Q  97 cactcggctttttacaccgaactacgtggttttgatccctcatggg 142  Q
    ||||| ||||||||| ||||| |||||||||||| |||||||||||    
T  6425 cactcagctttttaccccgaagtacgtggttttgctccctcatggg 6470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 263 - 401
Target Start/End: Original strand, 17809451 - 17809591
Alignment:
Q  263 gcaagaggttcctatagagtactatagacgttt-aggtggtaataccttctctttacgtaactaatccccggaccttaaatctcttataattgtgggttt 361  Q
    ||||||||||||||||||||||||||||||||| ||||| |||||| ||| |||| |||||| ||   ||| ||||| ||||||||| || |  ||||||    
T  17809451 gcaagaggttcctatagagtactatagacgtttaaggtgctaatacattccctttgcgtaaccaacttccgaacctttaatctcttaaaaattagggttt 17809550  T
Q  362 actcgaacttttcccctttccctt-gaaaaaattaaagctc 401  Q
    | |||| |||||||||||| |||| |||||||| |||||||    
T  17809551 attcgatcttttccccttttccttggaaaaaataaaagctc 17809591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 263 - 402
Target Start/End: Complemental strand, 24710157 - 24710016
Alignment:
Q  263 gcaagaggttcctatagagtactatagacgttta-ggtggtaataccttctctttacgtaactaatccccggaccttaaatctcttataattgtgggttt 361  Q
    |||||||||||||||||||| ||||||||||||| |||  | |||||||| ||||||||||| ||   ||| ||||| ||||||| | |||   ||||||    
T  24710157 gcaagaggttcctatagagtgctatagacgtttagggtcttgataccttccctttacgtaaccaactaccgaacctttaatctctaaaaatatagggttt 24710058  T
Q  362 actcgaacttttcccctttccctt-gaaaaaattaaagctcg 402  Q
    | ||||||||||||||||| |||| |||||||| ||||||||    
T  24710057 attcgaacttttccccttttccttggaaaaaataaaagctcg 24710016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 142
Target Start/End: Complemental strand, 22155832 - 22155795
Alignment:
Q  105 tttttacaccgaactacgtggttttgatccctcatggg 142  Q
    ||||||| |||||||||| |||||||||||||||||||    
T  22155832 tttttaccccgaactacgaggttttgatccctcatggg 22155795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 142
Target Start/End: Complemental strand, 22161840 - 22161803
Alignment:
Q  105 tttttacaccgaactacgtggttttgatccctcatggg 142  Q
    ||||||| |||||||||| |||||||||||||||||||    
T  22161840 tttttaccccgaactacgaggttttgatccctcatggg 22161803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 263 - 397
Target Start/End: Complemental strand, 20742622 - 20742487
Alignment:
Q  263 gcaagaggttcctatagagtactatagacgtttagg-tggtaataccttctctttacgtaactaatccccggaccttaaatctcttataattgtgggttt 361  Q
    ||||||||||||||||||||||||||||||| |||| || ||||| ||||  ||||||||| ||| ||||| || || ||||||| | |||   ||||||    
T  20742622 gcaagaggttcctatagagtactatagacgtctaggttgctaatatcttccttttacgtaattaaaccccgaacttttaatctctaaaaatatagggttt 20742523  T
Q  362 actcgaacttttcccctttcccttgaaaaaattaaa 397  Q
    | |||| |||||||||||| | ||||||||||||||    
T  20742522 attcgatcttttccccttttctttgaaaaaattaaa 20742487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 264 - 402
Target Start/End: Complemental strand, 10708852 - 10708714
Alignment:
Q  264 caagaggttcctatagagtactatagacgttt-aggtggtaataccttctctttacgtaactaatccccggaccttaaatctcttataattgtgggttta 362  Q
    |||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||  || ||||| |||||  |||||||| | || | || |||    
T  10708852 caagaggttcctatagagtactatagacgtttaaggtgttaataccttctcttaacgtaagcaacccccgaacctttgatctctta-atttttagggtta 10708754  T
Q  363 ctcgaacttttcccctttcccttgaaaaaattaaagctcg 402  Q
     |||||||||| | |||| ||||  |||||| ||||||||    
T  10708753 ttcgaactttttctcttttccttagaaaaataaaagctcg 10708714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 263 - 322
Target Start/End: Original strand, 15749370 - 15749430
Alignment:
Q  263 gcaagaggttcctatagagtactatagacgttta-ggtggtaataccttctctttacgtaa 322  Q
    |||||||||||||||||||||||||||||||||| |||| |||||||||| ||||||||||    
T  15749370 gcaagaggttcctatagagtactatagacgtttagggtgctaataccttccctttacgtaa 15749430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 266 - 397
Target Start/End: Complemental strand, 20735082 - 20734950
Alignment:
Q  266 agaggttcctatagagtactatagacgtttagg-tggtaataccttctctttacgtaactaatccccggaccttaaatctcttataattgtgggtttact 364  Q
    |||||||||||||||||||||||||||| |||| || | ||||||||  ||||||||||||| ||||  ||||| |||||   | |||   ||||||| |    
T  20735082 agaggttcctatagagtactatagacgtctaggttgctgataccttccttttacgtaactaagccccaaacctttaatcttcaaaaatatagggtttatt 20734983  T
Q  365 cgaacttttcccctttcccttgaaaaaattaaa 397  Q
    ||| |||||||||||| | ||| ||||| ||||    
T  20734982 cgatcttttccccttttctttggaaaaaataaa 20734950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 97 - 135
Target Start/End: Complemental strand, 20742794 - 20742756
Alignment:
Q  97 cactcggctttttacaccgaactacgtggttttgatccc 135  Q
    ||||||||||||||| |||||||||||| ||||||||||    
T  20742794 cactcggctttttaccccgaactacgtgattttgatccc 20742756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 142
Target Start/End: Complemental strand, 16030184 - 16030147
Alignment:
Q  105 tttttacaccgaactacgtggttttgatccctcatggg 142  Q
    ||||||| |||||||||| |||||||||||||||||||    
T  16030184 tttttaccccgaactacgaggttttgatccctcatggg 16030147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 264 - 348
Target Start/End: Complemental strand, 23280919 - 23280834
Alignment:
Q  264 caagaggttcctatagagtactatagacgtttagg-tggtaataccttctctttacgtaactaatccccggaccttaaatctctta 348  Q
    |||||||||||| ||||||||||  ||| || ||| || ||| |||||| ||||| |||||||| ||||| ||| |||||||||||    
T  23280919 caagaggttcctgtagagtactacggacattaagggtgctaacaccttccctttatgtaactaacccccgaaccctaaatctctta 23280834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 264 - 348
Target Start/End: Complemental strand, 23286818 - 23286733
Alignment:
Q  264 caagaggttcctatagagtactatagacgtttagg-tggtaataccttctctttacgtaactaatccccggaccttaaatctctta 348  Q
    |||||||||||| ||||||||||  ||| || ||| || ||| |||||| ||||| |||||||| ||||| ||| |||||||||||    
T  23286818 caagaggttcctgtagagtactacggacattaagggtgctaacaccttccctttatgtaactaacccccgaaccctaaatctctta 23286733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 263 - 410
Target Start/End: Original strand, 32701 - 32852
Alignment:
Q  263 gcaagaggttcctatagagtactatagacgttta---ggtggtaataccttctctttacgtaactaatccccggaccttaaatctcttataattgtgggt 359  Q
    |||||||||| ||||| |||||||||||||||||    ||| ||||||||||  ||| ||||||||| || |  ||| | ||||||||| |||   ||||    
T  32701 gcaagaggtttctatatagtactatagacgtttacggtgtgctaataccttccatttgcgtaactaaccctcaaaccattaatctcttaaaatatagggt 32800  T
Q  360 ttactcgaacttttcccctttccctt-gaaaaaattaaagctcgatagtgaa 410  Q
    ||| |||| |||||||||||| |||| |||||||| |||||||||| |||||    
T  32801 ttattcgatcttttccccttttccttggaaaaaataaaagctcgatggtgaa 32852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 264 - 402
Target Start/End: Original strand, 11586796 - 11586937
Alignment:
Q  264 caagaggttcctatagagtactatagacgtttagg-tggtaataccttctctttacgtaactaatccccggaccttaaatctcttataattgtgggttta 362  Q
    |||||||||| |||||  |||||||| | |||||| || ||| | |||| |||||||||||||| ||||| |||| |||||| ||| || |||| |||      
T  11586796 caagaggttcatataggatactataggcatttagggtgctaacatcttccctttacgtaactaacccccgaacctaaaatcttttaaaaatgtgagttat 11586895  T
Q  363 ctcgaactttt-cccctttccctt-gaaaaaattaaagctcg 402  Q
     |||||||||| |||||||||||| |||||||||||||||||    
T  11586896 ttcgaacttttccccctttcccttggaaaaaattaaagctcg 11586937  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 264 - 429
Target Start/End: Complemental strand, 14483757 - 14483591
Alignment:
Q  264 caagaggttcctatagagtactatagacgtttagg-tggtaataccttctctttacgtaactaatccccggaccttaaatctcttataattgtgggttta 362  Q
    ||||||||| |||| || | ||| ||||||||||| || |||||| ||  ||| |||||||||| ||||| ||||||||||| | | ||||||||| |||    
T  14483757 caagaggtttctatggaatcctacagacgtttagggtgctaatacttttccttaacgtaactaacccccgaaccttaaatctttaaaaattgtggg-tta 14483659  T
Q  363 ctcgaactttt-cccctttccctt-gaaaaaattaaagctcgatagtgaatcctgaatttctgagtcaa 429  Q
     |||||||||| |||||||||||| ||||| ||||||||| | | ||||| ||| ||||| ||||||||    
T  14483658 ttcgaacttttccccctttcccttggaaaatattaaagctaggtggtgaa-cctaaatttatgagtcaa 14483591  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 268 - 452
Target Start/End: Complemental strand, 15646644 - 15646455
Alignment:
Q  268 aggttcctatagagtactatagacgtttagg-tggtaataccttctctttacgtaactaatccccggaccttaaatctcttataattgtgggtttactc- 365  Q
    ||||||||||||  ||||| ||||||||||| || |||||||||| ||| ||||||| || ||| |||| ||  |||||||| || |  || |||  ||     
T  15646644 aggttcctataggatactacagacgtttagggtgctaataccttcccttaacgtaaccaaaccctggacatttgatctcttaaaaatagggtttttttcc 15646545  T
Q  366 ---gaacttttcccctttcccttgaaaaaattaaagctcgatagtgaatcctgaatttctgagtcaatgttgatcaatagcttgatatcc 452  Q
       ||| || |||||||||||||| |||||| |||| ||| | |||| |||| ||||| |||||||| | | | ||||||||||||||||    
T  15646544 tttgaatttctcccctttcccttggaaaaataaaagatcggtggtgagtcctaaatttgtgagtcaacgctaaccaatagcttgatatcc 15646455  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 264 - 345
Target Start/End: Complemental strand, 5269115 - 5269033
Alignment:
Q  264 caagaggttcctatagagtactatagacgtttaggtgg-taataccttctctttacgtaactaatccccggaccttaaatctc 345  Q
    ||||||||||||||||| || |||||||||||||| || ||| |||||| ||| ||||||| || ||| | ||||| ||||||    
T  5269115 caagaggttcctatagaatattatagacgtttaggaggctaacaccttcccttaacgtaaccaacccctgaacctttaatctc 5269033  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 138
Target Start/End: Original strand, 2890363 - 2890396
Alignment:
Q  105 tttttacaccgaactacgtggttttgatccctca 138  Q
    |||||||||||||||||| |||||||||||||||    
T  2890363 tttttacaccgaactacgaggttttgatccctca 2890396  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 402
Target Start/End: Complemental strand, 13541816 - 13541767
Alignment:
Q  355 tgggtttactcgaacttttcccc-tttcccttgaa-aaaattaaagctcg 402  Q
    |||||||| |||||||||||||| ||||||||||| ||||||||||||||    
T  13541816 tgggtttattcgaacttttccccctttcccttgaaaaaaattaaagctcg 13541767  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 104 - 159
Target Start/End: Complemental strand, 14483912 - 14483852
Alignment:
Q  104 ctttttacaccgaactacgtggttttgatccctcatggg-----aggcaaaagactttgtc 159  Q
    |||||||| | |||||||||||||||||||||||| |||     |||||||||||||||||    
T  14483912 ctttttaccctgaactacgtggttttgatccctcacgggtatgtaggcaaaagactttgtc 14483852  T

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Target: scaffold0058 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 264 - 411
Target Start/End: Complemental strand, 68695 - 68547
Alignment:
Q  264 caagaggttcctatagagtactatagacgtttagg-tggtaataccttctctttacgtaactaatccccggaccttaaatc-tcttataattgtgggttt 361  Q
    |||||||||||| |||  ||||| ||||||||||| || ||| |||||| ||||||||||||||| |||| |||  ||||| ||| | ||| |||||||     
T  68695 caagaggttcctgtaggatactacagacgtttagggtgctaacaccttccctttacgtaactaattcccgaacc-aaaatcttctaaaaatagtgggtta 68597  T
Q  362 actcgaacttttcccctttcccttgaaaaaattaaagctcgatagtgaat 411  Q
      || |||||| ||||||||| ||| ||||||||||| ||| | ||||||    
T  68596 tttcaaactttccccctttccattggaaaaattaaagttcgttggtgaat 68547  T

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Target: scaffold0555 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0555
Description:

Target: scaffold0555; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 265 - 344
Target Start/End: Complemental strand, 3946 - 3866
Alignment:
Q  265 aagaggttcctatagagtactatagacgttta-ggtggtaataccttctctttacgtaactaatccccggaccttaaatct 344  Q
    |||||||||||||||||||||||||  ||||| |||| ||| |||||| ||| | |||||||| ||||| |||| ||||||    
T  3946 aagaggttcctatagagtactataggtgtttagggtgttaacaccttcccttcatgtaactaacccccgaacctaaaatct 3866  T

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Target: scaffold0236 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 264 - 344
Target Start/End: Complemental strand, 26987 - 26906
Alignment:
Q  264 caagaggttcctatagagtactatagacgttta-ggtggtaataccttctctttacgtaactaatccccggaccttaaatct 344  Q
    |||||||||||  ||||||||||| |||||  | |||| |||||||||| ||||| |||||||| ||||| ||| |||||||    
T  26987 caagaggttcccgtagagtactatggacgtaaagggtgctaataccttccctttatgtaactaacccccgaaccctaaatct 26906  T

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