View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21441_high_1 (Length: 608)
Name: NF21441_high_1
Description: NF21441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21441_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 502; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 14 - 590
Target Start/End: Original strand, 34899398 - 34899975
Alignment:
| Q |
14 |
cccttttgttttgacacttctctaattgtttcttgtggtgctatttggatccttcttaaactcaacttgtatttattgggatctctttttcgtttaatat |
113 |
Q |
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| T |
34899398 |
cccttttgttttgacacttctctaattgtttcttgtggtgctatttggatccttcttaaactcaacttgtatttattgggatctctttttcgtttaatat |
34899497 |
T |
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| Q |
114 |
aatttttgacttcttcaacnnnnnnnntctatgaagacctggctgataagacttacaaataattagttggtagctgaatgcagaaaattgaatatcgaaa |
213 |
Q |
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| T |
34899498 |
aatttttgacttcttcaacaaaaaaaatctatgaagaagtgtctgctaagacttacaaataattagttggtagctgaatgcagaaaattgaatatcgaaa |
34899597 |
T |
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| Q |
214 |
atgtgtctctaaaaatgttcttagttattaggagaacctcaattagtgggtcagttgacatgttccacttggtttttatgtgca-gcaccacagaagcat |
312 |
Q |
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| T |
34899598 |
atgtgtctctaaaaatgttcttagttattaggagaacctcaactagtgggtcagttgacatgttccacttggtttttatgcgtaagtaccacacaagcat |
34899697 |
T |
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| Q |
313 |
atgcaaatgttacaataagataggcaagagataccaaattatcatattgtcagtgatatcatctgcacaaattcacataaaattttgtagttggaagata |
412 |
Q |
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| T |
34899698 |
atgcaaatgttataataagataggcaagagataccaaattatcatattgtcagtgatatcatctgcacaaattcacataaaattttgtagttggaagata |
34899797 |
T |
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| Q |
413 |
catacctttcacgtttggtgagaatggaaggaaaattttgagactataaggttgcatacacgcaggggaagacacaatttagcttttgttgacatcaaat |
512 |
Q |
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| T |
34899798 |
catacctttcatgtttggtgagaatggaaggaaaattttgagactataaggttgcatacacgcaggggaagacacaatttagcttttgttgacatcaaat |
34899897 |
T |
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| Q |
513 |
agcgagagaagaactaaagagagatgtgtttatatgcatataggtaaagtttggtagtttcaactttcaagttgagat |
590 |
Q |
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| T |
34899898 |
agcgagagaagaactaaagagagatgtgtttatatgcatataggtaaagtttggtagtttcaactttcaagttgagat |
34899975 |
T |
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