View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21441_high_4 (Length: 335)

Name: NF21441_high_4
Description: NF21441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21441_high_4
NF21441_high_4
[»] chr5 (4 HSPs)
chr5 (1-138)||(7927164-7927301)
chr5 (142-258)||(30964673-30964797)
chr5 (207-253)||(35836303-35836349)
chr5 (143-192)||(8862610-8862659)
[»] chr4 (1 HSPs)
chr4 (144-258)||(26144947-26145069)
[»] chr1 (2 HSPs)
chr1 (196-253)||(29633680-29633737)
chr1 (193-257)||(51946197-51946261)
[»] chr8 (2 HSPs)
chr8 (196-251)||(41076478-41076533)
chr8 (196-251)||(42009169-42009224)
[»] chr3 (2 HSPs)
chr3 (206-257)||(6102022-6102073)
chr3 (144-192)||(36827662-36827710)
[»] chr6 (1 HSPs)
chr6 (216-257)||(31047199-31047240)


Alignment Details
Target: chr5 (Bit Score: 138; Significance: 4e-72; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 7927164 - 7927301
Alignment:
Q  1 atgggaagaaggagagtgtgagtttgagattcatcacaaagtgaaatcaaattagtgagactttgatttctacgccaatgagcgggataattttcccacc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7927164 atgggaagaaggagagtgtgagtttgagattcatcacaaagtgaaatcaaattagtgagactttgatttctacgccaatgagcgggataattttcccacc 7927263  T
Q  101 ttcctgggctgttattacccaaccaccctagtaaataa 138  Q
    ||||||||||||||||||||||||||||||||||||||    
T  7927264 ttcctgggctgttattacccaaccaccctagtaaataa 7927301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 142 - 258
Target Start/End: Complemental strand, 30964797 - 30964673
Alignment:
Q  142 atgagtcctgataggtgaacacacatagctggcaacacactctgatacaccc----atgg----tagttttggtattttatcttttaatgaagggtagtt 233  Q
    |||||||||||||||||||||||| ||||||||||||||||||  ||||||     ||||    |||||||||||||| |||||||||||||||||||||    
T  30964797 atgagtcctgataggtgaacacacttagctggcaacacactcttgtacacctccatatggaggatagttttggtatttcatcttttaatgaagggtagtt 30964698  T
Q  234 tagtcaaaactcatataaaccttga 258  Q
    |||||||||||||||||||||||||    
T  30964697 tagtcaaaactcatataaaccttga 30964673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 253
Target Start/End: Complemental strand, 35836349 - 35836303
Alignment:
Q  207 tattttatcttttaatgaagggtagtttagtcaaaactcatataaac 253  Q
    ||||| |||||||||||||||||||||| |||| || ||||||||||    
T  35836349 tatttcatcttttaatgaagggtagttttgtcataattcatataaac 35836303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 192
Target Start/End: Complemental strand, 8862659 - 8862610
Alignment:
Q  143 tgagtcctgataggtgaacacacatagctggcaacacactctgatacacc 192  Q
    |||||||||||||||  ||| |||||||||||||||||| || |||||||    
T  8862659 tgagtcctgataggtagacatacatagctggcaacacacccttatacacc 8862610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 144 - 258
Target Start/End: Original strand, 26144947 - 26145069
Alignment:
Q  144 gagtcctgataggtgaacacacatagctggcaacacactctgatacaccc----atgg----tagttttggtattttatcttttaatgaagggtagttta 235  Q
    |||||||||| ||||||||||| ||||||||||||||||||  ||||||     ||||    |||||||||||||| |||||||||||||||||||||||    
T  26144947 gagtcctgatgggtgaacacacttagctggcaacacactcttgtacacctccatatggaggatagttttggtatttcatcttttaatgaagggtagttta 26145046  T
Q  236 gtcaaaactcatataaaccttga 258  Q
    |||||||||||||||||||||||    
T  26145047 gtcaaaactcatataaaccttga 26145069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 196 - 253
Target Start/End: Complemental strand, 29633737 - 29633680
Alignment:
Q  196 ggtagttttggtattttatcttttaatgaagggtagtttagtcaaaactcatataaac 253  Q
    |||||||||||||||| |||||||||||||||||||||| |||||||| |||||||||    
T  29633737 ggtagttttggtatttcatcttttaatgaagggtagttttgtcaaaacccatataaac 29633680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 193 - 257
Target Start/End: Complemental strand, 51946261 - 51946197
Alignment:
Q  193 catggtagttttggtattttatcttttaatgaagggtagtttagtcaaaactcatataaaccttg 257  Q
    |||| ||||||| ||||||  ||||||||||||||||||||| |||||||| |||||||||||||    
T  51946261 catgatagttttagtatttcttcttttaatgaagggtagttttgtcaaaacccatataaaccttg 51946197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 196 - 251
Target Start/End: Complemental strand, 41076533 - 41076478
Alignment:
Q  196 ggtagttttggtattttatcttttaatgaagggtagtttagtcaaaactcatataa 251  Q
    |||||||||||||||| | |||||||||||||||||||| |||||||| |||||||    
T  41076533 ggtagttttggtatttcaccttttaatgaagggtagttttgtcaaaacccatataa 41076478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 196 - 251
Target Start/End: Complemental strand, 42009224 - 42009169
Alignment:
Q  196 ggtagttttggtattttatcttttaatgaagggtagtttagtcaaaactcatataa 251  Q
    |||||||| ||||||| | |||||||||||||||||||| |||||||| |||||||    
T  42009224 ggtagtttcggtatttcaccttttaatgaagggtagttttgtcaaaacccatataa 42009169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 206 - 257
Target Start/End: Original strand, 6102022 - 6102073
Alignment:
Q  206 gtattttatcttttaatgaagggtagtttagtcaaaactcatataaaccttg 257  Q
    |||||| |||||||||||||| ||||||| |||||||| |||||||||||||    
T  6102022 gtatttcatcttttaatgaagagtagttttgtcaaaacccatataaaccttg 6102073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 144 - 192
Target Start/End: Original strand, 36827662 - 36827710
Alignment:
Q  144 gagtcctgataggtgaacacacatagctggcaacacactctgatacacc 192  Q
    ||||||||||||||  ||| |||||||||||||||||| || |||||||    
T  36827662 gagtcctgataggtagacatacatagctggcaacacacccttatacacc 36827710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 216 - 257
Target Start/End: Complemental strand, 31047240 - 31047199
Alignment:
Q  216 ttttaatgaagggtagtttagtcaaaactcatataaaccttg 257  Q
    ||||||||||||||||||| |||||||| |||||||||||||    
T  31047240 ttttaatgaagggtagttttgtcaaaacccatataaaccttg 31047199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University