View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21441_high_5 (Length: 327)
Name: NF21441_high_5
Description: NF21441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21441_high_5 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 9 - 327
Target Start/End: Original strand, 19343056 - 19343369
Alignment:
| Q |
9 |
tggtgttgtgtcactatctaattcgtcaaggaggtggaaagatatttttcctttagatcaagtggtggcatcaagctggttcaaatagcagtggccatct |
108 |
Q |
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| T |
19343056 |
tggtgttgtgtcactatctaattcgtcaaggaggtggaaagatatttttcctttagatcaagtggtgatatcaagctggttcaaataggagtggccatct |
19343155 |
T |
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| Q |
109 |
aaatacaaagtttcggaaagacccttggatatgtgaaactccgttatgtacgtgctttccaaggttgtttgcaatttctaggtataaggagaatacggta |
208 |
Q |
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| T |
19343156 |
aaatacaaagtttcggaaagacccttggatatgtgaaacttcgttatgtacgtgctttccaaggttgtttgcaatttctaggtata-----aatatggta |
19343250 |
T |
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| Q |
209 |
gcagactattttggtagagaagcggttgagggccagtggagaatggtatggagcataaacttgtttgtatgggatattgctttccataatcttttagttc |
308 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
19343251 |
gcagactattttggtagagaagcggtcgagggccagtggagaatggtatggagcataaacttgtttgtatgggatattgctttcgataatcttttagttc |
19343350 |
T |
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| Q |
309 |
ttctaaattcttttattta |
327 |
Q |
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||||||||||||||||||| |
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| T |
19343351 |
ttctaaattcttttattta |
19343369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 9 - 327
Target Start/End: Complemental strand, 19376141 - 19375824
Alignment:
| Q |
9 |
tggtgttgtgtcactatctaattcgtcaaggaggtggaaagatatttttcctttagatcaagtggtggcatcaagctggttcaaatagcagtggccatct |
108 |
Q |
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| T |
19376141 |
tggtgttgtgtcactatctaattcgtcaaggaggtggaaagatatttttcctttagatcaagtggtggtaccaagctggttcaaataggagtggccatct |
19376042 |
T |
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| Q |
109 |
aaatacaaagtttcggaaagacccttggatatgtgaaactccgttatgtacgtgctttccaaggttgtttgcaatttctaggtataaggagaatacggta |
208 |
Q |
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|||||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| | ||||||||||||| |||| |
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| T |
19376041 |
aaatacgaagtttcggaaagacccttggatatgtgaaacttcgctatgtacgtgctttccaaggttgtttgcaatttctggctataaggagaatatggta |
19375942 |
T |
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| Q |
209 |
gcagactattttggtagagaagcggttgagggccagtggagaatggtatggagcataaacttgtttgtatgggatattgctttccataatcttttagttc |
308 |
Q |
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||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
19375941 |
gca-actattttggtggagaagcggacgagggccagtggagaatggtatggagcataaacttgtttgtatgggatattgctttcgataatcttttagttc |
19375843 |
T |
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| Q |
309 |
ttctaaattcttttattta |
327 |
Q |
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||||||||||||||||||| |
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| T |
19375842 |
ttctaaattcttttattta |
19375824 |
T |
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