View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21441_high_8 (Length: 318)
Name: NF21441_high_8
Description: NF21441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21441_high_8 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 26 - 318
Target Start/End: Complemental strand, 7902475 - 7902183
Alignment:
| Q |
26 |
catcaacctccactactgtcatgtcgtgacccgcaatggcaaagaaaagctcatcgctgagggcagcgttgacgattctcatgaggtatgtcttcccttg |
125 |
Q |
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| T |
7902475 |
catcaacctccactactgtcatgttgtgacccgcaatggcaaagaaaagctcatcgttgagggcagcgttgacgattctcatgaggtatgtcttcccttg |
7902376 |
T |
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| Q |
126 |
ttctacctccattgcaaatgtgtctagaaaattgaagcaaattaattgaacttcaaataaagattttattctcttgtaaatataattaaatattttgtat |
225 |
Q |
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| T |
7902375 |
ttctacctccattgcaaatgtgtctagaaaattgaagcaaattaattgaacttcaaataaagaatttattctcttgtaactataattaaatattttgtat |
7902276 |
T |
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| Q |
226 |
ttgtacaaattgtattcagcctgttaattagatctacggtatagcatagtctatttaaaactgtgctcgactaatttttcttacgcttctcag |
318 |
Q |
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| T |
7902275 |
ttgtacaaattgtattcagcctgttaattagatctacggtatagcatagtctatttaaaactgtgctcgactaatttttcttacgcttctcag |
7902183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 26 - 156
Target Start/End: Complemental strand, 7892202 - 7892072
Alignment:
| Q |
26 |
catcaacctccactactgtcatgtcgtgacccgcaatggcaaagaaaagctcatcgctgagggcagcgttgacgattctcatgaggtatgtcttcccttg |
125 |
Q |
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||||||| || ||||||||||||| |||||| |||| || ||||||||||||||| | ||||| || |||| |||||| | || |||||||| || | |
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| T |
7892202 |
catcaacttcaactactgtcatgttgtgaccagcaagggaaaagaaaagctcatcattaagggctgcattgatgattcttagcagatatgtcttgccctt |
7892103 |
T |
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| Q |
126 |
ttctacctccattgcaaatgtgtctagaaaa |
156 |
Q |
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| T |
7892102 |
ctcaacctccattgcatatgtatctagaaaa |
7892072 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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