View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21442_high_1 (Length: 960)
Name: NF21442_high_1
Description: NF21442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21442_high_1 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 913; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 913; E-Value: 0
Query Start/End: Original strand, 20 - 948
Target Start/End: Original strand, 29981051 - 29981979
Alignment:
| Q |
20 |
atgcaaatgtagaaaactcagaagaagccaaatagcttccaacaggaccaagctcagcacaatcacttccatctagcaaaggtgctactggaggcattct |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29981051 |
atgcaaatgtagaaaactcagaagaagccaaatagcttccaacaggaccaagctcagcacaatcacttccatctagcaaaggtgctactggaggcattct |
29981150 |
T |
|
| Q |
120 |
acctgccaaaatcaaattgctcttattcctttcgctcaacacagttacaatatcttctttactttcaaccaacctttcctcataaactatagattcttca |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29981151 |
acctgccaaaatcaaattgctcttattcctttcgctcaacacagttacaatatcttctttactttcaaccaacctttcctcataaactatagattcttca |
29981250 |
T |
|
| Q |
220 |
ctcttacaacaaacacctaaaaactctgaccaaaattgatcatcttcttgtttatcttcatcaggtgtgttaccatctgacacttttattacttttctat |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
29981251 |
ctcttacaacaaacacctaaaaactctgaccaaaattgatcatcttcttgtttatcttcatcaggtgtgttaccatctgacacctttattacttttctat |
29981350 |
T |
|
| Q |
320 |
ctctgtcagctgttataccaatcaatttggcaccaaatgccaatgttttacctggcggagttataaattttaaaacagtgagtgaaattccaggatgttc |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29981351 |
ctctgtcagctgttataccaatcaatttggcaccaaatgccaatgttttacctggcggagttataaattttaaaacagtgagtgaaattccaggatgttc |
29981450 |
T |
|
| Q |
420 |
tgctattctcataccgtacgcaagtgcttctcgatcatcacatcctccaaagaaagctacaacaacattgtaagaaacatcactagcatggacttgagtt |
519 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29981451 |
tgctattctcataccgtacgcaagtgcttctcgatcatcacatcctccaaagaaagctacaacaacattgtaagaaacatcactagcatggacttgagtt |
29981550 |
T |
|
| Q |
520 |
gtccctccaaggccacgatcaaccaaaattccaactgagcaaggagcatggctaagtacaagtccattcattacgcgaaacgagtgtcctaatgattcca |
619 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
29981551 |
gtccctccaaggccacgatcaaccaaaattccaaccgagcaaggagcatggctaagtacaagtccattcattacgcgaaacgagtgccctaatgattcca |
29981650 |
T |
|
| Q |
620 |
tagttccatcaactcgttggtgtttgtgaaacggaagtagaatcatcgcaactcgcttttggtgtgcacttgaacaaatgtcttcatgaatgttattgag |
719 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29981651 |
tagttccatcaactcgttggtgtttgtgaaacggaagtagaatcatcgcaactcgcttttggtgtgcacttgaacaaatgtcttcatgaatgttattgag |
29981750 |
T |
|
| Q |
720 |
agatgaaattgctgtcatactacgaacattgacactacttaaatgtccataagcttgaaatgcaattaccatttggtctttgctgtcatgttgttttttg |
819 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
29981751 |
agatgaaattgctgtcatactacgaacattgacactacttaaatgtccataagcttgaaatgcaattaccatttggtctttgttgtcatgttgttttttg |
29981850 |
T |
|
| Q |
820 |
ttccaaaaaggcaagccattatttcttgccttatgaaccattgttatggctgaaggtctttctgagagttccattaagtgcattgcatatatacataact |
919 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29981851 |
ttccaaaaaggcaagccattatttcttgccttatgaaccattgttatggctgaaggtctttctgagagttccattaagtgcattgcatatatacataact |
29981950 |
T |
|
| Q |
920 |
ttcctcgctttcgtgttcctcttgatgat |
948 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
29981951 |
ttcctcgctttcgtgttcctcttgatgat |
29981979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 714 - 936
Target Start/End: Complemental strand, 8156284 - 8156063
Alignment:
| Q |
714 |
attgagagatgaaattgctgtcatactacgaacattgacactacttaaatgtccataagcttgaaatgcaattaccatttggtctttgctgtcatgttgt |
813 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
8156284 |
attgagagatgaaattgctgtcataggacgaacattgacactacttaaatgtccataagcttgaaatgcaattaccatttggtctttgttgtcatgttgt |
8156185 |
T |
|
| Q |
814 |
tttttgttccaaaaaggcaagccattatttcttgccttatgaaccattgttatggctgaaggtctttctgagagttccattaagtgcattgcatatatac |
913 |
Q |
| |
|
|||||||||| ||| |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8156184 |
tttttgttcc-aaagggcatgccattatttcttgccttatgaaccattcttatggctgaaggtctttctgagagttccattaagtgcattgcatatatac |
8156086 |
T |
|
| Q |
914 |
ataactttcctcgctttcgtgtt |
936 |
Q |
| |
|
|||||||| |||||||||||||| |
|
|
| T |
8156085 |
ataactttgctcgctttcgtgtt |
8156063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 399 - 940
Target Start/End: Complemental strand, 51405268 - 51404730
Alignment:
| Q |
399 |
gagtgaaattccaggatgttctgctattctcataccgtacgcaagtgcttctcgatcatcacatcctccaaagaaagctacaacaacattgtaagaaaca |
498 |
Q |
| |
|
|||| ||||||| ||||||||||| ||||||||||| || ||||||||||| |||| || | |||||| ||||| ||||||||| || | ||||| |
|
|
| T |
51405268 |
gagtaaaattcctggatgttctgccattctcataccataagcaagtgcttcatgatcgtcgcgtcctccgaagaagattacaacaaccttaaaggaaact |
51405169 |
T |
|
| Q |
499 |
tcactagcatggacttgagttgtccctccaaggccacgatcaaccaaaattccaactgagcaaggagcatggctaagtacaagtccattcattacgcgaa |
598 |
Q |
| |
|
||||| || || |||||| |||| ||||| || || ||||||| |||||||||||| || ||||| ||||| || | ||||| |||||||||| ||| |
|
|
| T |
51405168 |
tcacttgcttgaacttgacttgttcctccgagaccgcgatcaatcaaaattccaacagaacaaggtgcatgactcaacacaagctcattcattacatgaa |
51405069 |
T |
|
| Q |
599 |
acgagtgtcctaatgattccatagttccatcaactcgttggtgtttgtgaaacggaagtagaatcatcgcaactcgcttttggtgtgcacttgaacaaat |
698 |
Q |
| |
|
| || ||||||||||| ||||| |||||||| | || |||||||| || || ||||| || || |||| | |||||||| || ||||| | |||||| |
|
|
| T |
51405068 |
atgaatgtcctaatgactccatcgttccatctatacgctggtgtttatggaatggaaggagtattatcgaggcacgcttttgatgagcactagtacaaat |
51404969 |
T |
|
| Q |
699 |
gtcttcatgaatgttattgagagatgaaattgctgtcatactacgaacattgacactacttaaatgtccataagcttgaaatgcaattaccatttggtct |
798 |
Q |
| |
|
|||||||| ||||| |||||| ||||| |||||||| ||||||||||||||| | || | |||||| | ||| || || || |||||||| ||| |
|
|
| T |
51404968 |
atcttcatggatgttgctgagagcagaaatggctgtcatgggacgaacattgacactgttcaattttccataggtttggaaagcgataaccatttgatct |
51404869 |
T |
|
| Q |
799 |
ttgctgtcatgttgttttttgttccaaaaaggcaagccattatttcttgccttatgaaccattgttatggctgaaggtctttctgagagttccattaagt |
898 |
Q |
| |
|
| |||| |||||||||||||||||| |||| ||||| || | ||| || |||||||| | || ||||||| |||||||||||||||||| |||| |
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|
| T |
51404868 |
t---catcattttgttttttgttccaaaagggcattccattgttacgtgctttgtgaaccatggagatagctgaagatctttctgagagttccatcaagt |
51404772 |
T |
|
| Q |
899 |
gcattgcatatatacataactttcctcgctttcgtgttcctc |
940 |
Q |
| |
|
|||||||||| ||||| | ||||||||||||| ||||||| |
|
|
| T |
51404771 |
gcattgcatagatacagagtcttcctcgctttcgggttcctc |
51404730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 436 - 474
Target Start/End: Complemental strand, 8156322 - 8156284
Alignment:
| Q |
436 |
tacgcaagtgcttctcgatcatcacatcctccaaagaaa |
474 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
8156322 |
tacgcaagtgcttcgcgatcatcacatcctccgaagaaa |
8156284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 714 - 948
Target Start/End: Complemental strand, 7675006 - 7674772
Alignment:
| Q |
714 |
attgagagatgaaattgctgtcatactacgaacattgacactacttaaatgtccataagcttgaaatgcaattaccatttggtctttgctgtcatgttgt |
813 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
7675006 |
attgagagatgaaattgttgtcataggacgaacattgacactacttaaatgtccataagcttcaaatgcaattaccatttggtctttgttgtcatgttgt |
7674907 |
T |
|
| Q |
814 |
tttttgttccaaaaaggcaagccattatttcttgccttatgaaccattgttatggctgaaggtctttctgagagttccattaagtgcattgcatatatac |
913 |
Q |
| |
|
|||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
7674906 |
tttttgttccaaaagggcatgccattatttcttgccttatgaaccattgttatggctgaaggtctttctcagagttccattaagtgcattgcatatatac |
7674807 |
T |
|
| Q |
914 |
ataactttcctcgctttcgtgttcctcttgatgat |
948 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||| |
|
|
| T |
7674806 |
acaactttcctcgctttcgtgttcctcttgatgat |
7674772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 714 - 948
Target Start/End: Original strand, 36613439 - 36613673
Alignment:
| Q |
714 |
attgagagatgaaattgctgtcatactacgaacattgacactacttaaatgtccataagcttgaaatgcaattaccatttggtctttgctgtcatgttgt |
813 |
Q |
| |
|
||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
36613439 |
attgagagatgaaattgttgtcacaggacgaacattgacactacttaaatgtccataagcttcaaatgcaattaccatttggtctttgttgtcatgttgt |
36613538 |
T |
|
| Q |
814 |
tttttgttccaaaaaggcaagccattatttcttgccttatgaaccattgttatggctgaaggtctttctgagagttccattaagtgcattgcatatatac |
913 |
Q |
| |
|
|||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36613539 |
tttttgttccaaaagggcatgccattatttcttgccttatgaaccattgttatggctgaaggtctttctgagagttccattaagtgcattgcatatatac |
36613638 |
T |
|
| Q |
914 |
ataactttcctcgctttcgtgttcctcttgatgat |
948 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||| |
|
|
| T |
36613639 |
acaactttcctcgctttcgtgttcctcttgatgat |
36613673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 183; Significance: 2e-98; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 2e-98
Query Start/End: Original strand, 714 - 948
Target Start/End: Original strand, 25523662 - 25523896
Alignment:
| Q |
714 |
attgagagatgaaattgctgtcatactacgaacattgacactacttaaatgtccataagcttgaaatgcaattaccatttggtctttgctgtcatgttgt |
813 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |
|
|
| T |
25523662 |
attgagagatgaaattgttgtcataggacgaacaatgacactacttaaatgtccataagcttcaaatgcaattaccatttggtcttttttgtcatgttgt |
25523761 |
T |
|
| Q |
814 |
tttttgttccaaaaaggcaagccattatttcttgccttatgaaccattgttatggctgaaggtctttctgagagttccattaagtgcattgcatatatac |
913 |
Q |
| |
|
|||||||||||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
25523762 |
tttttgttccaaaagggcatgccaatatttcttgccttatgaaccattgttatggctgaaggtctttctgagagttctattaagtgcattgcatatatac |
25523861 |
T |
|
| Q |
914 |
ataactttcctcgctttcgtgttcctcttgatgat |
948 |
Q |
| |
|
| ||||||||| ||||||||||||||||||||||| |
|
|
| T |
25523862 |
acaactttccttgctttcgtgttcctcttgatgat |
25523896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 918 - 948
Target Start/End: Complemental strand, 47370132 - 47370102
Alignment:
| Q |
918 |
ctttcctcgctttcgtgttcctcttgatgat |
948 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
47370132 |
ctttcctcgctttcgtgttcctcttgatgat |
47370102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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