View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21442_high_2 (Length: 420)
Name: NF21442_high_2
Description: NF21442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21442_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 20 - 413
Target Start/End: Complemental strand, 47307342 - 47306951
Alignment:
| Q |
20 |
tcctagagggtctcagaaaaacatataaacccacaatctgcacagtgccagcagttgcatttaaacactgcaatcctgcttaatatccgggattgtgaaa |
119 |
Q |
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| T |
47307342 |
tcctagagggtctcagaaaaacatataaagccacaatctgca--gtgccagcagttgcatttaaacactgcaatcctgcttaatatccgggattgtgaaa |
47307245 |
T |
|
| Q |
120 |
cacaacctcaatttaagaccttaacccgaaccccgacaaaatcttagtcaatttatgaggaaactgccttaaattacatgtaaatagattgttttgtttg |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47307244 |
cacaacctcaatttaagaccttaacccgaaccccgacaaaatcttagtcaatttatgaggaaactgccttaaattacatgtaaatagattgttttgtttg |
47307145 |
T |
|
| Q |
220 |
taaaaggatccacaatttgaacttaaagtgtctctctagtttaacaacaattgaaagtgtatatgaatacctcagtatcagcatgtgggaaatttttcaa |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47307144 |
taaaaggatccacaatttgaacttaaagtgtctctctagtttaacaacaattgaaagtgtatatgaatacctcagtatcagcatgtgggaaatttttcaa |
47307045 |
T |
|
| Q |
320 |
acaattgaaaaccacacgatgaccattgatatccttagacaatacaatagctccaggggtcaaagctgacataattagacctctttgctctctg |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47307044 |
acaattgaaaaccacacgatgaccattgatatccttagacaatacaatagctccaggggtcaaagctgacataattagacctctttgctctctg |
47306951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 116; Significance: 7e-59; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 290 - 413
Target Start/End: Complemental strand, 23695010 - 23694887
Alignment:
| Q |
290 |
ctcagtatcagcatgtgggaaatttttcaaacaattgaaaaccacacgatgaccattgatatccttagacaatacaatagctccaggggtcaaagctgac |
389 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |
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| T |
23695010 |
ctcagtatcagcatgtgggaaatttttcaaacaattgaaaaccacacgatgaccattgaaatcattagacaatacaatagctccaggggtcaaagctgac |
23694911 |
T |
|
| Q |
390 |
ataattagacctctttgctctctg |
413 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
23694910 |
ataattagacctctttgctctctg |
23694887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 116; Significance: 7e-59; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 290 - 413
Target Start/End: Complemental strand, 20513285 - 20513162
Alignment:
| Q |
290 |
ctcagtatcagcatgtgggaaatttttcaaacaattgaaaaccacacgatgaccattgatatccttagacaatacaatagctccaggggtcaaagctgac |
389 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |
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| T |
20513285 |
ctcagtatcagcatgtgggaaatttttcaaacaattgaaaaccacacgatgaccattgacatctttagacaatacaatagctccaggggtcaaagctgac |
20513186 |
T |
|
| Q |
390 |
ataattagacctctttgctctctg |
413 |
Q |
| |
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|||||||||||||||||||||||| |
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|
| T |
20513185 |
ataattagacctctttgctctctg |
20513162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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