View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21442_high_4 (Length: 274)
Name: NF21442_high_4
Description: NF21442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21442_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 19754862 - 19755100
Alignment:
| Q |
1 |
atagtaatccaaagtttgctgagagataagtaaattttggccaaaaattgtttcagctaaagatcaaactcagattctaatgatgggtttgtcttaaata |
100 |
Q |
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| T |
19754862 |
atagtaatccaaagtttgccgagagataagtaagttttggccaaaaattgtttcagctaaagatcaaactcagattctaatgatgggtttgtcttaaata |
19754961 |
T |
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| Q |
101 |
gaaactcattaacaaaacagaggtttataggatatagcattcattctcaagtcacaaattttactatcctaataatcattgatttattaaaatatcaaga |
200 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
19754962 |
gaaactcattaacaaaa--------------atatagcattcattctcaagtcacaaattttactatcctaataattattgatttattaaaatatcaaga |
19755047 |
T |
|
| Q |
201 |
agtgaaaactttctaaacaactatcagtggttttcatggatcaaaaaattcat |
253 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
19755048 |
agtgaaaactttctaaagaactatcagtggttttcatggatcaaaaaattcat |
19755100 |
T |
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