View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21442_low_3 (Length: 322)
Name: NF21442_low_3
Description: NF21442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21442_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 38 - 307
Target Start/End: Original strand, 42030384 - 42030653
Alignment:
| Q |
38 |
agctatacattgaagaaatttgtcgtgatatctaccgttctgatccaggatggaaaataacactgttgagatacttcaaccccgttggtgcacatcctag |
137 |
Q |
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| T |
42030384 |
agctatacattgaagaaatttgtcgtgatatctaccgttctgatccaggatggaaaataacactgttgagatacttcaaccccgttggtgcacatcccag |
42030483 |
T |
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| Q |
138 |
tggtcatattggtgaggatcctcgcggaattcccaacaacctcatgccttttgttcagcaagttgcagttggcagacgctctgcattgacagtttttgga |
237 |
Q |
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| T |
42030484 |
tggtcatattggtgaggatcctcgcggaattcccaacaacctcatgccttttgttcagcaagttgcagttggcagacgctctgcattgacagtttttgga |
42030583 |
T |
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| Q |
238 |
acagattatagcacaagtgatggaactggagtatgttttctttgttcttgacttgttttactgaaatttt |
307 |
Q |
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| T |
42030584 |
acagattatagcacaagtgatggaactggagtatgttttctttgttcttgacttgttttgctgaaatttt |
42030653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 45 - 274
Target Start/End: Complemental strand, 2131904 - 2131675
Alignment:
| Q |
45 |
cattgaagaaatttgtcgtgatatctaccgttctgatccaggatggaaaataacactgttgagatacttcaaccccgttggtgcacatcctagtggtcat |
144 |
Q |
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| T |
2131904 |
cattgaagaaatctgtcgtgatgtcaatcgtgctgatccagattggaaaataatgttattgagatacttcaacccagtgggtgcacaccctagtggttat |
2131805 |
T |
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| Q |
145 |
attggtgaggatcctcgcggaattcccaacaacctcatgccttttgttcagcaagttgcagttggcagacgctctgcattgacagtttttggaacagatt |
244 |
Q |
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| T |
2131804 |
attggggaggatcctcacgggattccaaataatcttatgccatttattcagcaagtagcggttggcagacgtcctgcactgacagtttttggaaatgatt |
2131705 |
T |
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| Q |
245 |
atagcacaagtgatggaactggagtatgtt |
274 |
Q |
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| T |
2131704 |
ataaaacagttgatggtactggggtatgtt |
2131675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 46 - 274
Target Start/End: Complemental strand, 2127444 - 2127216
Alignment:
| Q |
46 |
attgaagaaatttgtcgtgatatctaccgttctgatccaggatggaaaataacactgttgagatacttcaaccccgttggtgcacatcctagtggtcata |
145 |
Q |
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||||||||||||||||||||| | | ||| |||| |||| |||||||||| | | | |||||| || ||||| || |||||||| ||||||||| ||| |
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| T |
2127444 |
attgaagaaatttgtcgtgatgttcatcgtgctgagccagactggaaaataatattatcgagatattttaacccagtgggtgcacaccctagtggttata |
2127345 |
T |
|
| Q |
146 |
ttggtgaggatcctcgcggaattcccaacaacctcatgccttttgttcagcaagttgcagttggcagacgctctgcattgacagtttttggaacagatta |
245 |
Q |
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| T |
2127344 |
ttggagaggatcctcgtggagttccaaacaatctcatgccattcattcagcaagtagcggttggcagacggcctgcactgacaatttttggaaatgatta |
2127245 |
T |
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| Q |
246 |
tagcacaagtgatggaactggagtatgtt |
274 |
Q |
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|| ||| |||||| ||||| ||||||| |
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| T |
2127244 |
taatacagttgatggtactggggtatgtt |
2127216 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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