View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21442_low_5 (Length: 227)
Name: NF21442_low_5
Description: NF21442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21442_low_5 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 42030050 - 42030276
Alignment:
| Q |
1 |
ttaaagtgtcttgtgagattggttgttgcaattttgttactgaacctgattctgtatttcttgattgatttcagcttgtgttctcctcttcagccactgt |
100 |
Q |
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| T |
42030050 |
ttaaagtgtcttgtgagattggttgttgcaattttgttactgaacctgattctgtatttcttgattgatttcagcttgtgttctcctcttcagccactgt |
42030149 |
T |
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| Q |
101 |
atatggttggccaaaggaggtcccctgcactgaagagtttcctttatcagctgcaagcccatatggacgaaccaaggtatggctaaagaactatttaggg |
200 |
Q |
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| T |
42030150 |
atacggttggccaaaggaggtcccctgcactgaagagtttcctttatcggctgcaagcccatatggacgaaccaaggtatgactaaagaactatttaggg |
42030249 |
T |
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| Q |
201 |
tgcttatcggatactttggtagggata |
227 |
Q |
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| T |
42030250 |
tacttatcggatactttggtagggata |
42030276 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 61 - 181
Target Start/End: Complemental strand, 2132272 - 2132152
Alignment:
| Q |
61 |
ttgattgatttcagcttgtgttctcctcttcagccactgtatatggttggccaaaggaggtcccctgcactgaagagtttcctttatcagctgcaagccc |
160 |
Q |
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|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || || ||||||||||||||| | ||||| |||| ||| |
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| T |
2132272 |
ttgaatgatttcagcttgtgttctcatcttcagccactgtatatggttggccaaaggaggttccatgtactgaagagtttcctctgtcagcagcaaaccc |
2132173 |
T |
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| Q |
161 |
atatggacgaaccaaggtatg |
181 |
Q |
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| T |
2132172 |
atatggacgaaccaaggtatg |
2132152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 71 - 181
Target Start/End: Complemental strand, 2127691 - 2127581
Alignment:
| Q |
71 |
tcagcttgtgttctcctcttcagccactgtatatggttggccaaaggaggtcccctgcactgaagagtttcctttatcagctgcaagcccatatggacga |
170 |
Q |
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||||||||||||||| ||||| ||||||||||||||||||||||||||||| || || || |||||||||||| | ||||| |||| |||||| ||||| |
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| T |
2127691 |
tcagcttgtgttctcatcttcggccactgtatatggttggccaaaggaggttccatgtacagaagagtttcctctgtcagcagcaaacccatacggacgt |
2127592 |
T |
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| Q |
171 |
accaaggtatg |
181 |
Q |
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| T |
2127591 |
accaaggtatg |
2127581 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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