View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21443_high_1 (Length: 776)
Name: NF21443_high_1
Description: NF21443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21443_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 350; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 170 - 762
Target Start/End: Complemental strand, 936578 - 935981
Alignment:
| Q |
170 |
tactgtgttgcttgaacttgacttagactttggtagctcaggaaaaaccggtattgtaggaatatattgatcatttggtgttcttggagattgtaacaaa |
269 |
Q |
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| T |
936578 |
tactgtgttgcttgaacttgacttcgactttggtagctcaggaaaaaccggtattgtaggaatatattgatcatttggtgttcttggagattgtaacaaa |
936479 |
T |
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| Q |
270 |
agtggcctcttagaatccatatgaagttttatctgctccgacctcaaatctgctacactgctttccgaggtattgtctgctttgagaggttccttcttag |
369 |
Q |
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| T |
936478 |
agtggcctcttagaatccatatgaagttttatctgctccgacctcaaatctgctacactgctttccgaggtattgtctg----------------cttag |
936395 |
T |
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| Q |
370 |
ttaaaacgcgtctgaattcaaagattcttcagacatgtttagaacattttagacttttgctacaaaagacacttgnnnnnnnnnnnntaattaagcaaga |
469 |
Q |
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| T |
936394 |
ttaaaacgcgtctgaattcaaagattcttcagacatgtttagaacattttagacttttgctacaaaaaacacttgaaaaaacaaaaataattaagcaaga |
936295 |
T |
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| Q |
470 |
agtagaaagtgttactac---------aatgaatgatatgttaaacaaaggaactaggttttgagcnnnnnnnnnnnngttttgtagaaatttttggaat |
560 |
Q |
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| T |
936294 |
cgtagaaagtgttactacaatgaatgaaatgaatgatatgttaaacaaaggaactaggttttgagcaaaaagaaaaaagttttgtagaaatttttggaat |
936195 |
T |
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| Q |
561 |
gattattattaacaagtttaa-------------ggttgtaaatgatattgaagaaggatttaagaacaagaacaacaaaaaacgtgttgaagagaa--a |
645 |
Q |
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| T |
936194 |
gatta-tattaacaagtttaaggtgtaaataaggggttgttaatgacattgaagaaggagttaagaaga--aagaacaaaaaacgtgttgaagagaaaga |
936098 |
T |
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| Q |
646 |
gagtttttaaggtcaaaggtggtaagtctatggcgggctttgcaagaaaatgaagaataagtcttaatgggtggcgacagtatgtgtatgtctctagaaa |
745 |
Q |
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| T |
936097 |
gagtttttaaggtcaaaggtggtaagtctatggcgggctttgcaagaaaatgaagaataagtcttaatgggtggcgacaatatgtgtatgtctctagaaa |
935998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 157; E-Value: 5e-83
Query Start/End: Original strand, 20 - 176
Target Start/End: Original strand, 936587 - 936743
Alignment:
| Q |
20 |
cggtgttgaattcggtcaagttgagaataaaaactcttcaaactcatcatcatcaagcaaaagttccatgtccattcattctatgggttctagcaagagg |
119 |
Q |
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| T |
936587 |
cggtgttgaattcggtcaagttgagaataaaaactcttcaaactcatcatcatcaagcaaaagttccatgtccattcattctatgggttctagcaagagg |
936686 |
T |
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| Q |
120 |
aacaattctgtgagggaaatgagtagtttaaaccattcaggatcaaaaagtactgtg |
176 |
Q |
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| T |
936687 |
aacaattctgtgagggaaatgagtagtttaaaccattcaggatcaaaaagtactgtg |
936743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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