View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21443_high_11 (Length: 322)
Name: NF21443_high_11
Description: NF21443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21443_high_11 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 54472889 - 54473191
Alignment:
| Q |
1 |
gttctctgcttatggaatttcttgcttctactctaccgatatatagtgtacagaaaatgactagtattataaacatgcaggtgcaaatcagtatatgtac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54472889 |
gttctctgcttatggaatttcttgcttctactctaccgatatatagtgtacagaaaatgactagtattataaacatgcaggtgcaaatcagtatatgtac |
54472988 |
T |
|
| Q |
101 |
aacaatggtgagcatgtgcttaatattcctccaccagctcaaggtggtggttggactccaacacctccaaaaaagacacctccaaaaatgacaccttcaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
54472989 |
aacaatggtgagcatgtgcttaatattcctccaccagctcaaggtggtggttggactccaacacctccaaaaaaaacacctccaaaaatgacaccttcaa |
54473088 |
T |
|
| Q |
201 |
aaaagacacctccgcaccaggttagtagcagtgagttgaccaactccagttactctggcccagtagatcctgtattgccaccaccacacccaacggttgc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54473089 |
aaaagacacctccgcaccaggttagtagcagtgagttgaccaactccagttactctggcccagtagatcctgtattgccaccaccacacccaacggttgc |
54473188 |
T |
|
| Q |
301 |
act |
303 |
Q |
| |
|
||| |
|
|
| T |
54473189 |
act |
54473191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University