View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21443_high_20 (Length: 220)
Name: NF21443_high_20
Description: NF21443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21443_high_20 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 169; Significance: 8e-91; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 17 - 201
Target Start/End: Complemental strand, 26560511 - 26560327
Alignment:
| Q |
17 |
aaaaatttaacgtaaatgtgtgtcccttaaatttgcagtgttagagtaagtaatgaattgggagcagcacatccaagagtagcaagattttcagtaatag |
116 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
26560511 |
aaaaatttaacgtaaatgtgcgtcccttaaatttgcagtgttagagtaagtaatgaattgggagcagcacatccaagactagcaagattttcagtaatag |
26560412 |
T |
|
| Q |
117 |
ttgtgaatgggactagccttctcatcagcttagtaatctctgcacttattctaatatttcgagtttcattaagcaaactcttcac |
201 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26560411 |
ttgtgaatgggactagccttctcatcagcatagtattctctgcacttattctaatatttcgagtttcattaagcaaactcttcac |
26560327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University