View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21443_low_10 (Length: 331)
Name: NF21443_low_10
Description: NF21443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21443_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 105 - 312
Target Start/End: Original strand, 54472984 - 54473191
Alignment:
| Q |
105 |
tgtacaacaatggtgagcatgtgcttaatattcctccaccagctcaaggtggtggttggactccaacacctccaaaaaagacacctccaaaaatgacacc |
204 |
Q |
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| T |
54472984 |
tgtacaacaatggtgagcatgtgcttaatattcctccaccagctcaaggtggtggttggactccaacacctccaaaaaaaacacctccaaaaatgacacc |
54473083 |
T |
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| Q |
205 |
ttcaaaaaagacacctccgcaccaggttagtagcagtgagttgaccaactccagttactctggcccagtagatcctgtattgccaccaccacacccaacg |
304 |
Q |
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| T |
54473084 |
ttcaaaaaagacacctccgcaccaggttagtagcagtgagttgaccaactccagttactctggcccagtagatcctgtattgccaccaccacacccaacg |
54473183 |
T |
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| Q |
305 |
gttgcact |
312 |
Q |
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|||||||| |
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| T |
54473184 |
gttgcact |
54473191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 54472913 - 54472802
Alignment:
| Q |
1 |
gcaagaaattccataagcagagaacacatatgtttggtaacaaagttataccaattgtgcagttcctttctatcatcgtcatcttaaaagattaggattt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
54472913 |
gcaagaaattccataagcagagaacacatatgtttggtaacaaagttataccaattgtgcagttcctttctatcatcgtcatcttaaaagaataggattt |
54472814 |
T |
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| Q |
101 |
aaattgtacaac |
112 |
Q |
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| T |
54472813 |
aaattgtacaac |
54472802 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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