View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21443_low_13 (Length: 289)
Name: NF21443_low_13
Description: NF21443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21443_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 23 - 275
Target Start/End: Complemental strand, 330819 - 330564
Alignment:
| Q |
23 |
ggttatccaccgcaacaaggatatcctccaccaccctacccagcacaagggtatcctccacaatatgctcctcctcaatacgctcaacctccacctcctc |
122 |
Q |
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| T |
330819 |
ggttatccaccgcaacaaggatatcctccaccaccctacccagcacaagggtatcctccacaatatgctcctcctcaatacgctcaacctccacctcctc |
330720 |
T |
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| Q |
123 |
aacatgtacacaatcacaacaattcaagcggccctggttgtttagaaggatggtacgtacgttaattacataattccctctctcatgcatgcatccatgc |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |
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| T |
330719 |
aacatgtacacaatcacaacaattcaagcggccctggttgtttagaaggatggtacgttcgttaattatataattccctctctcatgcatgcatccatgc |
330620 |
T |
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| Q |
223 |
attcctttcattcttaatctcttttgtctg---ctgccaaattggatctgcttcat |
275 |
Q |
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||||||||||||||||||||||| |||||| ||||||||| |||||||||||| |
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| T |
330619 |
attcctttcattcttaatctcttgtgtctgcttctgccaaatcagatctgcttcat |
330564 |
T |
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