View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21443_low_14 (Length: 278)

Name: NF21443_low_14
Description: NF21443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21443_low_14
NF21443_low_14
[»] chr4 (5 HSPs)
chr4 (16-269)||(7616055-7616308)
chr4 (31-267)||(7637892-7638128)
chr4 (17-261)||(7629452-7629696)
chr4 (17-261)||(7607067-7607311)
chr4 (75-261)||(7655242-7655428)
[»] chr7 (3 HSPs)
chr7 (30-267)||(8935158-8935395)
chr7 (30-267)||(8934217-8934454)
chr7 (173-267)||(8929905-8929999)
[»] chr3 (3 HSPs)
chr3 (40-252)||(40146456-40146668)
chr3 (74-206)||(40409481-40409613)
chr3 (164-252)||(8103316-8103404)
[»] chr6 (1 HSPs)
chr6 (74-226)||(6501373-6501525)


Alignment Details
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 16 - 269
Target Start/End: Complemental strand, 7616308 - 7616055
Alignment:
Q  16 gtttctacttggtacaaccaacccaaagggtcttctttatcaccatccagttgaagctaaccaaatccaacggctgagacactctttgtcctctgccctt 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7616308 gtttctacttggtacaaccaacccaaagggtcttctttatcaccatccagttgaagctaaccaaatccaacggctgagacactctttgtcctctgccctt 7616209  T
Q  116 gcctttttccaacctctttccggccgtctcaaaataacggagcacaatgacaacaccgtctcgtgttctgttatatgcaacaatgcaggtgtactcttta 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7616208 gcctttttccaacctctttccggccgtctcaaaataacggagcacaatgacaacaccgtctcgtgttctgttatatgcaacaatgcaggtgtactcttta 7616109  T
Q  216 tccatgctgcagctgagaatacttgtgttgctgacatcctagaacctacctatg 269  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7616108 tccatgctgcagctgagaatacttgtgttgctgacatcctagaacctacctatg 7616055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 31 - 267
Target Start/End: Complemental strand, 7638128 - 7637892
Alignment:
Q  31 aaccaacccaaagggtcttctttatcaccatccagttgaagctaaccaaatccaacggctgagacactctttgtcctctgcccttgcctttttccaacct 130  Q
    |||||||  |||||| |||||||||| |||||| |||| ||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||    
T  7638128 aaccaacaaaaagggccttctttatcgccatccggttgtagctaaccaaatccaacggctgagacactctctgtcctcagcccttgcctttttccaacct 7638029  T
Q  131 ctttccggccgtctcaaaataacggagcacaatgacaacaccgtctcgtgttctgttatatgcaacaatgcaggtgtactctttatccatgctgcagctg 230  Q
    ||| |||||||||||||||||||||| ||||  |||||||| || |||||||| |||||||||||||||||||||||||||||| ||||||| ||||| |    
T  7638028 cttgccggccgtctcaaaataacggaacacagagacaacactgtttcgtgttccgttatatgcaacaatgcaggtgtactctttgtccatgccgcagcag 7637929  T
Q  231 agaatacttgtgttgctgacatcctagaacctaccta 267  Q
    |||||||||||||||| |||||||||||||| |||||    
T  7637928 agaatacttgtgttgcagacatcctagaacccaccta 7637892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 17 - 261
Target Start/End: Complemental strand, 7629696 - 7629452
Alignment:
Q  17 tttctacttggtacaaccaacccaaagggtcttctttatcaccatccagttgaagctaaccaaatccaacggctgagacactctttgtcctctgcccttg 116  Q
    |||||||||| | ||||||||  |||||| |||||||||| |||||| |||| ||| | ||||||||||||||||||||||||| | ||||||||||||     
T  7629696 tttctacttgtttcaaccaacaaaaagggccttctttatcgccatccggttgtagcaacccaaatccaacggctgagacactctctatcctctgcccttt 7629597  T
Q  117 cctttttccaacctctttccggccgtctcaaaataacggagcacaatgacaacaccgtctcgtgttctgttatatgcaacaatgcaggtgtactctttat 216  Q
    ||||||| ||||||||| | ||||||||  |||||||||| ||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||    
T  7629596 ccttttttcaacctcttgctggccgtcttgaaataacggaacacaaggacaatactgtctcgtgttctgttatatgcaacaatgcaggtgtactctttat 7629497  T
Q  217 ccatgctgcagctgagaatacttgtgttgctgacatcctagaacc 261  Q
    ||| |||||||| ||||||||||||||||||||||||||||||||    
T  7629496 ccacgctgcagccgagaatacttgtgttgctgacatcctagaacc 7629452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 17 - 261
Target Start/End: Complemental strand, 7607311 - 7607067
Alignment:
Q  17 tttctacttggtacaaccaacccaaagggtcttctttatcaccatccagttgaagctaaccaaatccaacggctgagacactctttgtcctctgcccttg 116  Q
    |||||||||| | ||||||||  |||||| ||||||||||| ||||| || |  || | ||||||||||||| ||||||||||| | ||||||||||||     
T  7607311 tttctacttgtttcaaccaacaaaaagggccttctttatcatcatccggtggttgcaacccaaatccaacggttgagacactctctatcctctgcccttt 7607212  T
Q  117 cctttttccaacctctttccggccgtctcaaaataacggagcacaatgacaacaccgtctcgtgttctgttatatgcaacaatgcaggtgtactctttat 216  Q
    ||||||||||||||||| ||||||| ||  |||||||||| || |  |||||||  ||||| ||||| ||||||||||| ||||||||||||||||||||    
T  7607211 cctttttccaacctcttgccggccgccttgaaataacggaacatagagacaacattgtctcatgttccgttatatgcaataatgcaggtgtactctttat 7607112  T
Q  217 ccatgctgcagctgagaatacttgtgttgctgacatcctagaacc 261  Q
    ||| |||| ||| ||||||| | |||||||||||||||| |||||    
T  7607111 ccacgctgtagcagagaatattcgtgttgctgacatcctggaacc 7607067  T

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Target: chr4; HSP #5
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 75 - 261
Target Start/End: Original strand, 7655242 - 7655428
Alignment:
Q  75 accaaatccaacggctgagacactctttgtcctctgcccttgcctttttccaacctctttccggccgtctcaaaataacggagcacaatgacaacaccgt 174  Q
    ||||||| |||||||||| ||||||||| ||||| |||||| ||||||||||||||||| |||| ||||||||||| || || ||| | |||| ||  ||    
T  7655242 accaaattcaacggctgacacactctttatcctcagccctttcctttttccaacctcttgccggtcgtctcaaaattacagaacacgaagacagcattgt 7655341  T
Q  175 ctcgtgttctgttatatgcaacaatgcaggtgtactctttatccatgctgcagctgagaatacttgtgttgctgacatcctagaacc 261  Q
    |||||||||||| | |||||| ||||||||||||  |||||| |||||||||||  || ||||||||||||||||||||||| ||||    
T  7655342 ctcgtgttctgtaacatgcaataatgcaggtgtaaactttatacatgctgcagccaaggatacttgtgttgctgacatcctaaaacc 7655428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 122; Significance: 1e-62; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 30 - 267
Target Start/End: Original strand, 8935158 - 8935395
Alignment:
Q  30 caaccaacccaaagggtcttctttatcaccatccagttgaagctaaccaaatccaacggctgagacactctttgtcctctgcccttgcctttttccaacc 129  Q
    ||||||||  |||||| ||| ||||||||||||| |||| | ||||||||||||||||||||||||||||| | || ||  |||||||||||||||||||    
T  8935158 caaccaacaaaaagggccttttttatcaccatccggttgtatctaaccaaatccaacggctgagacactctctatcttcaacccttgcctttttccaacc 8935257  T
Q  130 tctttccggccgtctcaaaataacggagcacaatgacaacaccgtctcgtgttctgttatatgcaacaatgcaggtgtactctttatccatgctgcagct 229  Q
    |||| ||||||||||||||||||||||  || | ||||| || |||||||| || |||||||||||||||||||||||||||||| |||||||   | |     
T  8935258 tcttgccggccgtctcaaaataacggaataccaagacaaaactgtctcgtgctccgttatatgcaacaatgcaggtgtactctttgtccatgccagatca 8935357  T
Q  230 gagaatacttgtgttgctgacatcctagaacctaccta 267  Q
    ||||||||||||||||||||||| |||||||| |||||    
T  8935358 gagaatacttgtgttgctgacattctagaacccaccta 8935395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 30 - 267
Target Start/End: Original strand, 8934217 - 8934454
Alignment:
Q  30 caaccaacccaaagggtcttctttatcaccatccagttgaagctaaccaaatccaacggctgagacactctttgtcctctgcccttgcctttttccaacc 129  Q
    ||||||||  |||||| ||||||||| ||||||| |||| | ||||||||||||||| ||| ||||||||| | || ||  |||||||||||||||||||    
T  8934217 caaccaacaaaaagggccttctttattaccatccggttgtatctaaccaaatccaacagctaagacactctctatcttcaacccttgcctttttccaacc 8934316  T
Q  130 tctttccggccgtctcaaaataacggagcacaatgacaacaccgtctcgtgttctgttatatgcaacaatgcaggtgtactctttatccatgctgcagct 229  Q
    ||||  ||| |||||||||||||||||  || | ||||| || |||||||| || ||||||||||||||||||| |||||||||| |||||||   | |     
T  8934317 tcttgtcggtcgtctcaaaataacggaataccaagacaaaactgtctcgtgctccgttatatgcaacaatgcagatgtactctttgtccatgccagatca 8934416  T
Q  230 gagaatacttgtgttgctgacatcctagaacctaccta 267  Q
    ||||||||||||||||||||||| |||||||| |||||    
T  8934417 gagaatacttgtgttgctgacattctagaacccaccta 8934454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 173 - 267
Target Start/End: Original strand, 8929905 - 8929999
Alignment:
Q  173 gtctcgtgttctgttatatgcaacaatgcaggtgtactctttatccatgctgcagctgagaatacttgtgttgctgacatcctagaacctaccta 267  Q
    |||||||| || ||||||||||||||||||| |||||||||| | |||||   | | ||||||||||||||||||||||| |||||||| |||||    
T  8929905 gtctcgtgctccgttatatgcaacaatgcagttgtactctttgttcatgccagatcagagaatacttgtgttgctgacattctagaacccaccta 8929999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 40 - 252
Target Start/End: Original strand, 40146456 - 40146668
Alignment:
Q  40 aaagggtcttctttatcaccatccagttgaagctaaccaaatccaacggctgagacactctttgtcctctgcccttgcctttttccaacctctttccggc 139  Q
    ||||||||||||||||||||||||  | |   | |||||||| ||||  |||| ||||||| | || ||| ||||||||||||||| ||| ||| | |||    
T  40146456 aaagggtcttctttatcaccatcctctagtgccaaaccaaattcaacatctgaaacactctctatcttctacccttgcctttttcccaccacttgcaggc 40146555  T
Q  140 cgtctcaaaataacggagcacaatgacaacaccgtctcgtgttctgttatatgcaacaatgcaggtgtactctttatccatgctgcagctgagaatactt 239  Q
    |||||  ||||||| || ||||| ||||||||||| || ||||| || | ||||||||||||||| |  |||||| |||||||||| || ||||| ||||    
T  40146556 cgtctagaaataacagatcacaaggacaacaccgtttcatgttccgtcacatgcaacaatgcaggcgcgctctttgtccatgctgcggcagagaacactt 40146655  T
Q  240 gtgttgctgacat 252  Q
    |||| | ||||||    
T  40146656 gtgtaggtgacat 40146668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 74 - 206
Target Start/End: Original strand, 40409481 - 40409613
Alignment:
Q  74 aaccaaatccaacggctgagacactctttgtcctctgcccttgcctttttccaacctctttccggccgtctcaaaataacggagcacaatgacaacaccg 173  Q
    |||||||| ||||  |||| ||||||| | |||||||||||||||||||||| ||| ||| | ||||||||  | | ||| || || || |||||||||     
T  40409481 aaccaaattcaacatctgaaacactctctatcctctgcccttgcctttttcccaccacttgcaggccgtctagagagaacagaccataaagacaacacca 40409580  T
Q  174 tctcgtgttctgttatatgcaacaatgcaggtg 206  Q
    | ||||||| ||| | |||||||||||||||||    
T  40409581 tttcgtgttgtgtcacatgcaacaatgcaggtg 40409613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 164 - 252
Target Start/End: Complemental strand, 8103404 - 8103316
Alignment:
Q  164 gacaacaccgtctcgtgttctgttatatgcaacaatgcaggtgtactctttatccatgctgcagctgagaatacttgtgttgctgacat 252  Q
    ||||||||| | |||||||| || |  ||||||||||| |||||||||||| |||||||| || ||||||| |||||||| | ||||||    
T  8103404 gacaacaccatgtcgtgttcggtcacgtgcaacaatgccggtgtactctttgtccatgctacaactgagaacacttgtgtaggtgacat 8103316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 74 - 226
Target Start/End: Complemental strand, 6501525 - 6501373
Alignment:
Q  74 aaccaaatccaacggctgagacactctttgtcctctgcccttgcctttttccaacctctttccggccgtctcaaaataacggagcacaatgacaacaccg 173  Q
    ||||||||  |||| || ||||||||||| ||||||| |||||||||||||||||| ||| | |||||||||||||| |||||  || | |||||||  |    
T  6501525 aaccaaatagaacgccttagacactctttatcctctgtccttgcctttttccaaccacttgcgggccgtctcaaaatgacggaaaacgaagacaacaatg 6501426  T
Q  174 tctcgtgttctgttatatgcaacaatgcaggtgtactctttatccatgctgca 226  Q
    | || |||||  | | ||||||||||||||||||||||||| |||| ||||||    
T  6501425 tttcatgttccatcacatgcaacaatgcaggtgtactctttgtccacgctgca 6501373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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