View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21443_low_15 (Length: 270)

Name: NF21443_low_15
Description: NF21443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21443_low_15
NF21443_low_15
[»] chr5 (4 HSPs)
chr5 (1-191)||(1012793-1012988)
chr5 (132-182)||(6383750-6383800)
chr5 (135-185)||(18923721-18923771)
chr5 (135-184)||(16049620-16049669)
[»] scaffold0040 (2 HSPs)
scaffold0040 (9-106)||(68335-68432)
scaffold0040 (130-182)||(68253-68305)
[»] chr8 (2 HSPs)
chr8 (15-106)||(7253037-7253128)
chr8 (127-184)||(7253154-7253211)
[»] chr3 (6 HSPs)
chr3 (127-186)||(27657930-27657989)
chr3 (128-163)||(12009875-12009910)
chr3 (130-182)||(22004058-22004110)
chr3 (130-182)||(22011575-22011627)
chr3 (134-182)||(26959979-26960027)
chr3 (130-182)||(27949173-27949225)
[»] chr7 (6 HSPs)
chr7 (9-103)||(2704236-2704330)
chr7 (127-180)||(32839175-32839228)
chr7 (127-182)||(2704152-2704207)
chr7 (127-182)||(26762381-26762436)
chr7 (27-107)||(328255-328334)
chr7 (27-83)||(26049627-26049683)
[»] chr4 (4 HSPs)
chr4 (135-183)||(5826668-5826716)
chr4 (135-183)||(35346299-35346347)
chr4 (130-182)||(33017689-33017741)
chr4 (135-183)||(48401207-48401255)
[»] chr2 (2 HSPs)
chr2 (135-184)||(41055757-41055806)
chr2 (132-184)||(9205944-9205996)


Alignment Details
Target: chr5 (Bit Score: 93; Significance: 2e-45; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 1012988 - 1012793
Alignment:
Q  1 ggggtgaaagaaagatgatggaataatgtaaaaagtatctagtgttgagggagcatgatgatactatggtttttaaaagtttttaaatatatccaatggt 100  Q
    ||||||||||||||||||||||||  ||||||||||||||||| ||||| |||||| ||||||||||||| || ||||||||||||||||||||||||||    
T  1012988 ggggtgaaagaaagatgatggaatggtgtaaaaagtatctagttttgagagagcataatgatactatggtcttcaaaagtttttaaatatatccaatggt 1012889  T
Q  101 taacatttcttttgcgnnnnnnnnngaa-----gtcaaatctcctacggtaggagatctaaagaggtcatctaccgcagcctttgccttaaaacac 191  Q
    |||||||||||||||           ||     ||||| |||||||||||||||||||||||||||||| |||||  || ||||||||||||||||    
T  1012888 taacatttcttttgcaaaaaaaaaaaaaaaaaggtcaagtctcctacggtaggagatctaaagaggtcacctaccatagtctttgccttaaaacac 1012793  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 182
Target Start/End: Original strand, 6383750 - 6383800
Alignment:
Q  132 aaatctcctacggtaggagatctaaagaggtcatctaccgcagcctttgcc 182  Q
    |||||||||||||||||||| ||||||||| |  |||||| ||||||||||    
T  6383750 aaatctcctacggtaggagacctaaagaggcctcctaccgtagcctttgcc 6383800  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 185
Target Start/End: Complemental strand, 18923771 - 18923721
Alignment:
Q  135 tctcctacggtaggagatctaaagaggtcatctaccgcagcctttgcctta 185  Q
    |||||||||||||||||||||||||||||  |||||  |||||||| ||||    
T  18923771 tctcctacggtaggagatctaaagaggtctcctaccatagcctttgtctta 18923721  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 135 - 184
Target Start/End: Complemental strand, 16049669 - 16049620
Alignment:
Q  135 tctcctacggtaggagatctaaagaggtcatctaccgcagcctttgcctt 184  Q
    |||||||||| |||||| |||||||||| | |||||| ||||||||||||    
T  16049669 tctcctacggcaggagacctaaagaggttacctaccgtagcctttgcctt 16049620  T

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Target: scaffold0040 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 9 - 106
Target Start/End: Complemental strand, 68432 - 68335
Alignment:
Q  9 agaaagatgatggaataatgtaaaaagtatctagtgttgagggagcatgatgatactatggtttttaaaagtttttaaatatatccaatggttaacat 106  Q
    |||| ||||||| |||| ||||||||||||||||||||||| ||| || || |||  ||| | || ||||||||||||||||||||||||||||||||    
T  68432 agaaggatgatgaaatagtgtaaaaagtatctagtgttgagagagtataataatatcatgatcttcaaaagtttttaaatatatccaatggttaacat 68335  T

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Target: scaffold0040; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 182
Target Start/End: Complemental strand, 68305 - 68253
Alignment:
Q  130 tcaaatctcctacggtaggagatctaaagaggtcatctaccgcagcctttgcc 182  Q
    |||| ||||||||||||||||| |||||||||||  |||||| ||||| ||||    
T  68305 tcaagtctcctacggtaggagacctaaagaggtcgcctaccgtagcctatgcc 68253  T

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Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 15 - 106
Target Start/End: Original strand, 7253037 - 7253128
Alignment:
Q  15 atgatggaataatgtaaaaagtatctagtgttgagggagcatgatgatactatggtttttaaaagtttttaaatatatccaatggttaacat 106  Q
    ||||||||||| ||||||||||||||||||||||| ||| || || |||  |||||  | ||||||||| |||||||||||||| |||||||    
T  7253037 atgatggaatagtgtaaaaagtatctagtgttgagagagtataataatatcatggtcatcaaaagttttcaaatatatccaatgattaacat 7253128  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 127 - 184
Target Start/End: Original strand, 7253154 - 7253211
Alignment:
Q  127 aagtcaaatctcctacggtaggagatctaaagaggtcatctaccgcagcctttgcctt 184  Q
    ||||||| ||||||||||||||||| |||||||| ||  |||||| ||||||||||||    
T  7253154 aagtcaagtctcctacggtaggagacctaaagagatcgcctaccgtagcctttgcctt 7253211  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 127 - 186
Target Start/End: Original strand, 27657930 - 27657989
Alignment:
Q  127 aagtcaaatctcctacggtaggagatctaaagaggtcatctaccgcagcctttgccttaa 186  Q
    ||||||| ||||||||||||||||| |||||||||||  |||||| ||| ||||||||||    
T  27657930 aagtcaagtctcctacggtaggagacctaaagaggtctcctaccgtagcgtttgccttaa 27657989  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 128 - 163
Target Start/End: Original strand, 12009875 - 12009910
Alignment:
Q  128 agtcaaatctcctacggtaggagatctaaagaggtc 163  Q
    |||||| |||||||||||||||||||||||||||||    
T  12009875 agtcaagtctcctacggtaggagatctaaagaggtc 12009910  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 182
Target Start/End: Original strand, 22004058 - 22004110
Alignment:
Q  130 tcaaatctcctacggtaggagatctaaagaggtcatctaccgcagcctttgcc 182  Q
    |||| ||||||||||||||||| |||||||||||  | |||| ||||||||||    
T  22004058 tcaagtctcctacggtaggagacctaaagaggtctcccaccgtagcctttgcc 22004110  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 182
Target Start/End: Original strand, 22011575 - 22011627
Alignment:
Q  130 tcaaatctcctacggtaggagatctaaagaggtcatctaccgcagcctttgcc 182  Q
    |||| ||||||||||||||||| |||||||||||  | |||| ||||||||||    
T  22011575 tcaagtctcctacggtaggagacctaaagaggtctcccaccgtagcctttgcc 22011627  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 182
Target Start/End: Original strand, 26959979 - 26960027
Alignment:
Q  134 atctcctacggtaggagatctaaagaggtcatctaccgcagcctttgcc 182  Q
    |||||||||||||||||| |||||||||||  | |||| ||||||||||    
T  26959979 atctcctacggtaggagacctaaagaggtctcccaccgtagcctttgcc 26960027  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 182
Target Start/End: Original strand, 27949173 - 27949225
Alignment:
Q  130 tcaaatctcctacggtaggagatctaaagaggtcatctaccgcagcctttgcc 182  Q
    |||| ||||||||||||||||| |||||||||||  | |||| ||||||||||    
T  27949173 tcaagtctcctacggtaggagacctaaagaggtctcccaccgtagcctttgcc 27949225  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 103
Target Start/End: Complemental strand, 2704330 - 2704236
Alignment:
Q  9 agaaagatgatggaataatgtaaaaagtatctagtgttgagggagcatgatgatactatggtttttaaaagtttttaaatatatccaatggttaa 103  Q
    |||| |||||||||||| |||||||||||||||| |||||| ||| || || |||  |||||  | | ||  |||||||||||||||||||||||    
T  2704330 agaaggatgatggaatagtgtaaaaagtatctagcgttgagagagtataataatatcatggtcatcagaaaattttaaatatatccaatggttaa 2704236  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 127 - 180
Target Start/End: Original strand, 32839175 - 32839228
Alignment:
Q  127 aagtcaaatctcctacggtaggagatctaaagaggtcatctaccgcagcctttg 180  Q
    ||||||| |||||||||||||||||||||||||||||  | |||| ||||||||    
T  32839175 aagtcaagtctcctacggtaggagatctaaagaggtctcccaccgtagcctttg 32839228  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 127 - 182
Target Start/End: Complemental strand, 2704207 - 2704152
Alignment:
Q  127 aagtcaaatctcctacggtaggagatctaaagaggtcatctaccgcagcctttgcc 182  Q
    |||| |||||||||||| ||||||| |||||||||||  |||||| ||||||||||    
T  2704207 aagttaaatctcctacgataggagacctaaagaggtcgcctaccgtagcctttgcc 2704152  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 127 - 182
Target Start/End: Original strand, 26762381 - 26762436
Alignment:
Q  127 aagtcaaatctcctacggtaggagatctaaagaggtcatctaccgcagcctttgcc 182  Q
    ||||||| ||||||||||||||||| | |||||||||  |||||| ||||||||||    
T  26762381 aagtcaagtctcctacggtaggagacccaaagaggtcgcctaccgtagcctttgcc 26762436  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 107
Target Start/End: Complemental strand, 328334 - 328255
Alignment:
Q  27 tgtaaaaagtatctagtgttgagggagcatgatgatactatggtttttaaaagtttttaaatatatccaatggttaacatt 107  Q
    ||||||||  ||||||||||||| ||| ||  | |||||||||| || ||||| ||| ||||||||||||||||| |||||    
T  328334 tgtaaaaataatctagtgttgagagagtatt-taatactatggtcttcaaaagctttcaaatatatccaatggttgacatt 328255  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 83
Target Start/End: Original strand, 26049627 - 26049683
Alignment:
Q  27 tgtaaaaagtatctagtgttgagggagcatgatgatactatggtttttaaaagtttt 83  Q
    ||||||||| ||||||||||||| |||  |||| |||||||||| ||||||| ||||    
T  26049627 tgtaaaaagaatctagtgttgagagagtgtgataatactatggtctttaaaattttt 26049683  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 183
Target Start/End: Complemental strand, 5826716 - 5826668
Alignment:
Q  135 tctcctacggtaggagatctaaagaggtcatctaccgcagcctttgcct 183  Q
    ||||||||||||||||||||||||| |||  |||||| |||||||||||    
T  5826716 tctcctacggtaggagatctaaagaagtctcctaccgtagcctttgcct 5826668  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 183
Target Start/End: Complemental strand, 35346347 - 35346299
Alignment:
Q  135 tctcctacggtaggagatctaaagaggtcatctaccgcagcctttgcct 183  Q
    ||||||||||||||||| |||||||||||  |||||| |||||||||||    
T  35346347 tctcctacggtaggagacctaaagaggtcgcctaccgtagcctttgcct 35346299  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 182
Target Start/End: Complemental strand, 33017741 - 33017689
Alignment:
Q  130 tcaaatctcctacggtaggagatctaaagaggtcatctaccgcagcctttgcc 182  Q
    |||| ||||||||||||||||| | |||||||||  |||||| ||||||||||    
T  33017741 tcaagtctcctacggtaggagacccaaagaggtcgcctaccgtagcctttgcc 33017689  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 183
Target Start/End: Complemental strand, 48401255 - 48401207
Alignment:
Q  135 tctcctacggtaggagatctaaagaggtcatctaccgcagcctttgcct 183  Q
    ||||||||||||||||| |||| ||||||| |||||| |||||| ||||    
T  48401255 tctcctacggtaggagacctaaggaggtcacctaccgtagccttggcct 48401207  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 135 - 184
Target Start/End: Complemental strand, 41055806 - 41055757
Alignment:
Q  135 tctcctacggtaggagatctaaagaggtcatctaccgcagcctttgcctt 184  Q
    ||||||||||||||||| |||| ||||||| |||||| |||||| |||||    
T  41055806 tctcctacggtaggagacctaaggaggtcacctaccgtagccttggcctt 41055757  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 184
Target Start/End: Complemental strand, 9205996 - 9205944
Alignment:
Q  132 aaatctcctacggtaggagatctaaagaggtcatctaccgcagcctttgcctt 184  Q
    |||||||||||| || |||||||||||||||| || |||| ||| ||||||||    
T  9205996 aaatctcctacgatatgagatctaaagaggtcttccaccgtagcatttgcctt 9205944  T

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