View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21443_low_18 (Length: 252)
Name: NF21443_low_18
Description: NF21443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21443_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 45683174 - 45682936
Alignment:
| Q |
1 |
ggtagattctaagatagtttttaatatcaaaagttgtgaggttgaaattattctttagtacataatatgttgttgttaagtatcatgttctgtagctcgc |
100 |
Q |
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| T |
45683174 |
ggtagatactaagatagtttttaatatcaaaagttgtgaggttgaaattattctttagtacataatatgttgttgttaagtatcatgttctgtagctcgc |
45683075 |
T |
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| Q |
101 |
tttgtctttatgctttcaaattaatcctgtatattccttctaaaattctttcatctgaatgtccaggatccttgtcgccctggagtcaaagaggctgtga |
200 |
Q |
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| T |
45683074 |
tttgtctttatgctttcaaattaatcctgtatattccttctaaaattctttcatctgaatgtccaggatccttgtcgccctggagtcaaagaggctgtga |
45682975 |
T |
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| Q |
201 |
gattatgcactgaggctggtgttaaggtaaagttttcat |
239 |
Q |
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| T |
45682974 |
gattatgcactgaggctggtgttaaggtaaagttttcat |
45682936 |
T |
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Back To:
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Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 164 - 230
Target Start/End: Original strand, 1444423 - 1444489
Alignment:
| Q |
164 |
caggatccttgtcgccctggagtcaaagaggctgtgagattatgcactgaggctggtgttaaggtaa |
230 |
Q |
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| T |
1444423 |
caggatccttgtcgccctggtgtcaaagatgccgtgagaatatgcactgacgctggtgttaaggtaa |
1444489 |
T |
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