View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21443_low_19 (Length: 240)
Name: NF21443_low_19
Description: NF21443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21443_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 43874991 - 43875200
Alignment:
| Q |
1 |
aagagggaaagaggtcaatacaacaagggatatccattagtaagtgttggatgttgtgtgtgatagcatattttataataatttggaatatacttggctc |
100 |
Q |
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| T |
43874991 |
aagagggaaagaggtcaatacaacaagggatatccattagtaagtgttggatattgtgtgtgatagcatattttataataatttggaatatacttggctc |
43875090 |
T |
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| Q |
101 |
catgtaatatgggcagtcaacatcgagagtgtgtatagtggttgagccatcgcaaagagataaaaattgagacaggaatacgctgaaagtttccttggtc |
200 |
Q |
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| T |
43875091 |
aatgtaatatcggcagtcaacatc--gagtgtgtatagtggttgagccatcgcaaagagataaaaattgagacaggaatacactgaaagtttccttggtc |
43875188 |
T |
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| Q |
201 |
ctaaagtatgaa |
212 |
Q |
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|||||||||||| |
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| T |
43875189 |
ctaaagtatgaa |
43875200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 43867310 - 43867532
Alignment:
| Q |
1 |
aagagggaaagaggtcaatacaacaagggatatccattagtaagtgttggatgttgtgtgtgatagcatattttataataatttggaatatacttggctc |
100 |
Q |
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||||||||||||||||||||| |||||||| || ||||||||||||||||| ||||| | ||||| ||||||||||| |||||||| | || ||||| |
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| T |
43867310 |
aagagggaaagaggtcaatacgacaagggaaattcattagtaagtgttggacattgtgggaaatagcgtattttataatcatttggaacaggctaggctc |
43867409 |
T |
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| Q |
101 |
catgtaatatgggcagtcaacatcgagagtgtgtatagtggttgagccatcgcaaagagataaaaattgagacaggaatacgctgaaagtttccttggtc |
200 |
Q |
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| T |
43867410 |
caagtaatataggcagtgaacatcgagagtgtgtatagtggttgagccatcgcgaagagataaaaagtgagacaggaattcggctaaacttttctcggtc |
43867509 |
T |
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| Q |
201 |
ctaaagtatgaagaacataatgt |
223 |
Q |
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| T |
43867510 |
ctaaagttcgaagaacttaatgt |
43867532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 69 - 223
Target Start/End: Original strand, 43863886 - 43864040
Alignment:
| Q |
69 |
tattttataataatttggaatatacttggctccatgtaatatgggcagtcaacatcgagagtgtgtatagtggttgagccatcgcaaagagataaaaatt |
168 |
Q |
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||||||||||| |||| ||||| |||||||||| | |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
43863886 |
tattttataatcattttgaataggcttggctccaaggaatatgggcagtaaacatcgagagtgtgtatagtggttgagccatcgcgaagagataaaaatt |
43863985 |
T |
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| Q |
169 |
gagacaggaatacgctgaaagtttccttggtcctaaagtatgaagaacataatgt |
223 |
Q |
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| T |
43863986 |
gagacagaaattcgcttaaactttccttggtcctaaagtttgaagaacttaatgt |
43864040 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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