View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21443_low_2 (Length: 559)
Name: NF21443_low_2
Description: NF21443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21443_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 492; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 16 - 539
Target Start/End: Complemental strand, 3084871 - 3084348
Alignment:
| Q |
16 |
atacaaattttatttctattttataaatcaaaatatcgtgcttgaatatggaccgttcaattttgatcaaacggctaccaatgtccggctgtatgaatac |
115 |
Q |
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| T |
3084871 |
atacaaattttatttctattttataaatcaaaatatcgtgcttgaatatggaccgttcaattttgatcaaacggctaccaatgtccggctgtatgaatac |
3084772 |
T |
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| Q |
116 |
gttgatttcttaattgcaggggagtcggtcccaaaaatagtgtaatattgttatttgttagctaggccatattgatgtttatttggtttgggttttaact |
215 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
3084771 |
gttgatttcttaattgcaggagagtcggtcccaaaaatagtgtaatattgttatttgttagctaggccatattgatgtttatttggtttggattttaact |
3084672 |
T |
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| Q |
216 |
tttacataataaattgagttgggtgtgacttagcaagtgtaattgcatgttgttttgaaagctttgcagtaaatgtagtatgtcttcctaaaagaaaatg |
315 |
Q |
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| T |
3084671 |
tttacataataaattgagttgggtgtaacttagcaagtgcaattgcatgttgttttgaaagctttgcagtaaatgtagtatgtcttcctaaaagaaaatg |
3084572 |
T |
|
| Q |
316 |
taccatgtcttgaaaaagtattcataagtcgaaaacatatcgcactagtttgtaagaattgatttagatcgaacacaaattgttaaatgtaccttgggag |
415 |
Q |
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| T |
3084571 |
taccatgtcttgaaaaagtattaataagtcgaagacatatcgcactagtttgtaagaattgatttagatggaacacaaattgttaaatgtaccttgggag |
3084472 |
T |
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| Q |
416 |
taaacattttgaactcgcttccattactggtgaaggctgcaccgctcacggcttcaatgtagctgccgaagttggtaatgccaacaactgaaatgaggga |
515 |
Q |
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| T |
3084471 |
taaacattgtgaactcgcttccattactggtgaaggctgcaccgctcacggcttcaatgtagctgccgaagttggtaatgccaacaactgaaatgaggga |
3084372 |
T |
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| Q |
516 |
gacctctacgggggaaggagacgg |
539 |
Q |
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| T |
3084371 |
gacctctacgggggaaggagacgg |
3084348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 313 - 536
Target Start/End: Complemental strand, 3093455 - 3093231
Alignment:
| Q |
313 |
atgtaccatgtcttgaaaaagtat-tcataagtcgaaaacatatcgcactagtttgtaagaattgatttagatcgaacacaaattgttaaatgtaccttg |
411 |
Q |
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||||| |||||||| |||||||| ||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| | |
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| T |
3093455 |
atgtaacatgtctttaaaaagtaagtcataggtcaaagacatatcgcactagtttgtaagaattgatttagatcgaacacaaattttaaaatgtacctcg |
3093356 |
T |
|
| Q |
412 |
ggagtaaacattttgaactcgcttccattactggtgaaggctgcaccgctcacggcttcaatgtagctgccgaagttggtaatgccaacaactgaaatga |
511 |
Q |
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|||| ||||||| ||| || ||| | || |||||| | ||| ||||| |||||||||| |||||||| ||| |||||||||||||||| ||||||| |
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| T |
3093355 |
ggagaaaacattccgaagtctctttgagaaccggtgaatgttgcgccgctagcggcttcaatatagctgccaaagctggtaatgccaacaacagaaatga |
3093256 |
T |
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| Q |
512 |
gggagacctctacgggggaaggaga |
536 |
Q |
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|||| |||||||| || |||||||| |
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| T |
3093255 |
gggaaacctctaccggagaaggaga |
3093231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 45 - 143
Target Start/End: Complemental strand, 3093718 - 3093623
Alignment:
| Q |
45 |
aaaatatcgtgcttgaatatggaccgttcaattttgatcaaacggctaccaatgtccggctgtatgaatacgttgatttcttaattgcaggggagtcgg |
143 |
Q |
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||||||||| | ||||||||| ||||||||||||||||||| ||||| ||||| ||| |||||| | | |||| |||||||||||||||||||| |
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| T |
3093718 |
aaaatatcgcgattgaatatgacttgttcaattttgatcaaacgactacc---gtccgactgcatgaatgcatggattccttaattgcaggggagtcgg |
3093623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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