View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21443_low_3 (Length: 500)
Name: NF21443_low_3
Description: NF21443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21443_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 326; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 18 - 493
Target Start/End: Original strand, 3261977 - 3262451
Alignment:
| Q |
18 |
acaacttatgggattggtagtggcatggttctcccaaatagattatgaacttgatgcttctggcnnnnnnncaaaagtgaaagggtgattaccaattttt |
117 |
Q |
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| T |
3261977 |
acaacttatgggattggtagtggcatggttctccctaatagattatgaacttgatgcttctggcaaaaaaacaaaagtgaaagggtgattaccaattttt |
3262076 |
T |
|
| Q |
118 |
gcacagtgttaatgttgatgtatacaaccctatatgggagcctaaagattagaatcttcagcaaatgggttccgtnnnnnnntaagtattgtcacgaaat |
217 |
Q |
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| T |
3262077 |
acacagtgttaatgttgatgtatacaaccctatataggagcctaaagattagaatcttcagcaaatgggtttcgtaaaaaa-taagtattgtcacgaaat |
3262175 |
T |
|
| Q |
218 |
tcactgtttaaagaaattgggctatcggaaaaagggctctcagactttaaaaattcg-atggttttggtggcagcatcactttcgttcacgaacgaggca |
316 |
Q |
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| T |
3262176 |
tcattgtttaaagaaattgggctatcagaaaaagggctgtcagactttaaaaattcttatttttttgtgggcagcaccactttcgttcacgaacgaggca |
3262275 |
T |
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| Q |
317 |
caaagggaatatatcaaatttggttaatgaaatcgttttggtggaagaagtgcagacattatttaacgccacttttaacactgtcatagtgaagggtggt |
416 |
Q |
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| T |
3262276 |
caaagggaatataccaaatttggttaatgaaatcattttggtggaagaagtgcagacattgtttaacgccac-tttaacactgtcatagtgaagggtggt |
3262374 |
T |
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| Q |
417 |
tagagttatttgttaaaattgaggggatgtaagtgatatattaacatagcttgagggaggtgagtataatctaccca |
493 |
Q |
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| T |
3262375 |
tagagttatttgttaaaattgaggggatgtaagtgataaattaacatacctcaagggaggtgagtgtaatttaccca |
3262451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 22 - 220
Target Start/End: Complemental strand, 746270 - 746074
Alignment:
| Q |
22 |
cttatgggattggtagtggcatggttctcccaaatagattatgaacttgatgcttctggcnnnnnnncaaaagtgaaagggtgattaccaatttttgcac |
121 |
Q |
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|||||| ||||| |||||||||||||||||| ||| ||| |||||||||||||||||||| |||||||||||||||| |||||||||| |||| |
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| T |
746270 |
cttatgagattgatagtggcatggttctccctaatggatcatgaacttgatgcttctggcaaaaaaacaaaagtgaaagggtgtttaccaatttgtgca- |
746172 |
T |
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| Q |
122 |
agtgttaatgttgatgtatacaaccctatatgggagcctaaagattagaatcttcagcaaatgggttccgtnnnnnnntaagtattgtcacgaaattca |
220 |
Q |
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| T |
746171 |
-gtgttaatgttgatgtatacagccctatctatgagcctaaagattagaatcttcagcaaattggttccgtaaaaaattaagtgttgtcacgaaattca |
746074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 289 - 486
Target Start/End: Complemental strand, 746031 - 745814
Alignment:
| Q |
289 |
agcatcactttcgttcacgaacgaggcacaaagggaatatatcaaatttggttaatgaaatcgttttggtggaagaagtgcagac--------------- |
373 |
Q |
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| T |
746031 |
agcaccactttcattcacgaacaaggcacaaagggaatagaccaaatttggttgatgaaatcgttttggtggaagaagtgcagactaaagtttgagtttt |
745932 |
T |
|
| Q |
374 |
------attatttaacgccacttttaacactgtcatagtgaagggtggttagagttatttgttaaaattgaggggatgtaagtgatatattaacatagct |
467 |
Q |
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| T |
745931 |
tcttttattatttaacgcca-ttttaacaccatcatagtgaagggaggttagtgttatttgttaaaatcgagggggtgtaagtgatatattaacatactt |
745833 |
T |
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| Q |
468 |
tgagggaggtgagtataat |
486 |
Q |
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| T |
745832 |
tgagggaggtgagtgtaat |
745814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 390 - 460
Target Start/End: Original strand, 42331624 - 42331694
Alignment:
| Q |
390 |
tttaacactgtcatagtgaagggtggttagagttatttgttaaaattgaggggatgtaagtgatatattaa |
460 |
Q |
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| T |
42331624 |
tttaacactgttacattaaagggaggttagtgttatttgtgaaaatagagggggtgtaagtgacatattaa |
42331694 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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