View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21443_low_6 (Length: 387)
Name: NF21443_low_6
Description: NF21443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21443_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 340; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 10 - 369
Target Start/End: Original strand, 11640186 - 11640545
Alignment:
| Q |
10 |
gcacagacgtccaatcataccttcaagctcaagtcaaaggctttcatcaagacttgatagtcaaggtaatttggaattaattttgttcataattaattat |
109 |
Q |
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| T |
11640186 |
gcacagacgtccaatcataccttcaagctcaagtcaaaggctttcatcaagacttgatagtcaaggtaatttggaattaattttgttaataattaattat |
11640285 |
T |
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| Q |
110 |
atacaatacatgctcaatgcacaaattaaaactataatcatactttagtgtggaagtcaaataaatatatgaacatgcatatcaacaaccttaggatcta |
209 |
Q |
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| T |
11640286 |
atacaatacatgctcaatgcacaaattaaaactataatcatactttagtgtggaagtcaaataaatatatgaacatgcatatcaacaaccttaggatcta |
11640385 |
T |
|
| Q |
210 |
cggcatgctgatttatcaaagatattttaaaaatacctgatttcattgataatagtctctcgacagtactcctaaaattcagagagtcgctgataatgaa |
309 |
Q |
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| T |
11640386 |
cggcgtgttgatttatcaaagatattttaaaaatacctgatttcattgataatagtctctcaacagtactcctaaaattcagagagtcgctgataatgaa |
11640485 |
T |
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| Q |
310 |
cacctaccggttagtgcttctccctcaactggaacttatatgcttttcagatggggataa |
369 |
Q |
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| T |
11640486 |
cacctaccggttagtgcttctccctcaactggaacttatatgctcttcagatggggataa |
11640545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 30 - 341
Target Start/End: Original strand, 11621724 - 11622033
Alignment:
| Q |
30 |
cttcaagctcaagtcaaaggctttcatcaagacttgatagtcaaggtaat-ttggaattaattttgttcataattaattatatacaatacatgctcaatg |
128 |
Q |
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| T |
11621724 |
cttcaagctcaagtcaaaggttttcatcaaggcttgatagtcaaggtgatgttgaaattaattttgatagtaactaattgcatactagacatctttaata |
11621823 |
T |
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| Q |
129 |
cacaaattaaaactataatcatactttagtgtggaagtcaaataaatatatgaacatgcatatcaacaaccttaggatctacggcatgctgatttatcaa |
228 |
Q |
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| T |
11621824 |
cacaaattagaactatattcatactttagtacagaagtcaaataagtatacgaacatgtatataaacaaccttaggatctacggcatgttgatttatcag |
11621923 |
T |
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| Q |
229 |
agatattttaaaaatacctgatttcattgataatagtctctcgacagtactcctaaaattcagagagtcgctgataatgaacacctaccggttagtgctt |
328 |
Q |
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| T |
11621924 |
agata--ttaagaatacctaatttaattgataatattctctcggcagcaatcctaaaatactgagaattgctggtaatgaacaccta-tgctttgtgctt |
11622020 |
T |
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| Q |
329 |
ctccctcaactgg |
341 |
Q |
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| T |
11622021 |
ctccctcaactgg |
11622033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 31 - 107
Target Start/End: Complemental strand, 11605845 - 11605768
Alignment:
| Q |
31 |
ttcaagctcaagtcaaaggctttcatcaagacttgatagtcaaggtaat-ttggaattaattttgttcataattaatt |
107 |
Q |
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| T |
11605845 |
ttcaagctcaagtcaaaggcgttcatcaaggcttgatagtcaaggtaatgttggaatttattttgataataattaatt |
11605768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 42 - 107
Target Start/End: Complemental strand, 14484668 - 14484602
Alignment:
| Q |
42 |
gtcaaaggctttcatcaagacttgatagtcaaggtaat-ttggaattaattttgttcataattaatt |
107 |
Q |
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| T |
14484668 |
gtcaaaggcgttcatcaaggcttgatagtcaaagtaatgttggaatttattttgataataattaatt |
14484602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 42 - 107
Target Start/End: Original strand, 33735417 - 33735483
Alignment:
| Q |
42 |
gtcaaaggctttcatcaagacttgatagtcaaggtaat-ttggaattaattttgttcataattaatt |
107 |
Q |
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| T |
33735417 |
gtcaaaggcgttcatcaaggcttgatagtcaaggtaatgttggaatttattttgataataattaatt |
33735483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 141
Target Start/End: Original strand, 53807338 - 53807378
Alignment:
| Q |
100 |
aattaattatatacaatacatgctcaatgcacaaattaaaac |
141 |
Q |
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| T |
53807338 |
aattaattatatacaat-catgttcaatgcacaaattaaaac |
53807378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 202
Target Start/End: Complemental strand, 49510362 - 49510305
Alignment:
| Q |
145 |
aatcatactttagtgtggaagtcaaataaatatatgaacatgcatatcaacaacctta |
202 |
Q |
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| T |
49510362 |
aatcatatattagtgtagaagtcaaataaacatatgagcatgcatatctacaatctta |
49510305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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