View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21443_low_7 (Length: 377)
Name: NF21443_low_7
Description: NF21443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21443_low_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 170; Significance: 4e-91; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 82 - 362
Target Start/End: Complemental strand, 25155361 - 25155081
Alignment:
| Q |
82 |
aacaaagaacaaagaaaagcagctgcaggatgtgaatgaagaacaaactgtgtccttaaatatgtagccttgtactttaaatttcaacctgagattcctt |
181 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |
|
|
| T |
25155361 |
aacaaagaacaaagaaaagcagctgcaggatgtgaatgaagaacaaactgtgtccttaaatatgtaggcttgtactttaaatttcaatctgagattcctt |
25155262 |
T |
|
| Q |
182 |
ctccttttccaattttctgtactttcacggccgtaaaggtgtttcgcagccataacggcgttccataacgttcgtaccaacaannnnnnnnnnnnnnnnn |
281 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||| || ||| |||||||||||| ||||||||||| |||| | |
|
|
| T |
25155261 |
ctccttttccaattttctgtactttcagggccgtaaaggtgttttgcggccgtaacggcgttccgtaacgttcgtaacaacgatttttttgtgatttctt |
25155162 |
T |
|
| Q |
282 |
nnnnctcagcgtgaaaaggtacaaaaacggtaatagtggctgccgttaccgttttgtaatgcccgtttttgcggtaacgtt |
362 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
25155161 |
ttttctcagcgtgaaaaggtacaaaaacggtaacagtggctgccgttaccgttttgtaacacccgtttttgcggtaacgtt |
25155081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 25155417 - 25155505
Alignment:
| Q |
1 |
atccatatctgcttcttcaagaggtaattttaaattgacagttcaacactcccaatctcaactcaacctcttaatttgggtaacaaaga |
89 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
25155417 |
atccatatctgcttcttcaagaggtaattttaaattgacagtttgacactctcaatctcaacacaacctcttaatttgggaaacaaaga |
25155505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 144 - 217
Target Start/End: Complemental strand, 29836750 - 29836677
Alignment:
| Q |
144 |
tgtagccttgtactttaaa-tttcaacctgagattccttctccttttccaattttctgtactttcacggccgtaa |
217 |
Q |
| |
|
||||| ||||||||||||| ||| || |||||||||||||||| ||||||| ||||| ||||||||| ||||||| |
|
|
| T |
29836750 |
tgtagtcttgtactttaaagtttaaatctgagattccttctcc-tttccaaatttctttactttcacagccgtaa |
29836677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 290 - 340
Target Start/End: Original strand, 2643651 - 2643701
Alignment:
| Q |
290 |
gcgtgaaaaggtacaaaaacggtaatagtggctgccgttaccgttttgtaa |
340 |
Q |
| |
|
||||||||||||||||||||||| | |||||||| | ||||||||||||| |
|
|
| T |
2643651 |
gcgtgaaaaggtacaaaaacggtcacggtggctgctgataccgttttgtaa |
2643701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 290 - 340
Target Start/End: Original strand, 9924 - 9974
Alignment:
| Q |
290 |
gcgtgaaaaggtacaaaaacggtaatagtggctgccgttaccgttttgtaa |
340 |
Q |
| |
|
|||||||||||| |||||||||||| |||||||| | ||||||||||||| |
|
|
| T |
9924 |
gcgtgaaaaggtccaaaaacggtaaaggtggctgctgataccgttttgtaa |
9974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University