View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21443_low_8 (Length: 376)
Name: NF21443_low_8
Description: NF21443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21443_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 361
Target Start/End: Complemental strand, 25155441 - 25155081
Alignment:
| Q |
1 |
acctcttgaagaagcagatatggatatggttgagggcttgactcttgaggcacgtatggtaattggtaagtgaagttgtgaacaaagaacaaagaaaagc |
100 |
Q |
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| T |
25155441 |
acctcttgaagaagcagatatggatctggttgagggcttgactcttgaggcacgtatggtaattggtaagtgaagttgtgaacaaagaacaaagaaaagc |
25155342 |
T |
|
| Q |
101 |
agctgcaggatgtgaatgaagaacaaactgtgtccttaaatatgtagccttgtactttaaatttcaacctgagattccttctccttttccaattttctgt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
25155341 |
agctgcaggatgtgaatgaagaacaaactgtgtccttaaatatgtaggcttgtactttaaatttcaatctgagattccttctccttttccaattttctgt |
25155242 |
T |
|
| Q |
201 |
actttcacggccgtaaaggtgtttcgcagccataacggcgttccataacgttcgtaccaacaannnnnnnnnnnnnnnnnnnnnctcagcgtgaaaaggt |
300 |
Q |
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| T |
25155241 |
actttcagggccgtaaaggtgttttgcggccgtaacggcgttccgtaacgttcgtaacaacgatttttttgtgatttcttttttctcagcgtgaaaaggt |
25155142 |
T |
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| Q |
301 |
acaaaaacggtaatagtggctgccgttaccgttttgtaatgcccgtttttgcggtaacgtt |
361 |
Q |
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| T |
25155141 |
acaaaaacggtaacagtggctgccgttaccgttttgtaacacccgtttttgcggtaacgtt |
25155081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 143 - 216
Target Start/End: Complemental strand, 29836750 - 29836677
Alignment:
| Q |
143 |
tgtagccttgtactttaaa-tttcaacctgagattccttctccttttccaattttctgtactttcacggccgtaa |
216 |
Q |
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| T |
29836750 |
tgtagtcttgtactttaaagtttaaatctgagattccttctcc-tttccaaatttctttactttcacagccgtaa |
29836677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 289 - 339
Target Start/End: Original strand, 2643651 - 2643701
Alignment:
| Q |
289 |
gcgtgaaaaggtacaaaaacggtaatagtggctgccgttaccgttttgtaa |
339 |
Q |
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| T |
2643651 |
gcgtgaaaaggtacaaaaacggtcacggtggctgctgataccgttttgtaa |
2643701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 289 - 339
Target Start/End: Original strand, 9924 - 9974
Alignment:
| Q |
289 |
gcgtgaaaaggtacaaaaacggtaatagtggctgccgttaccgttttgtaa |
339 |
Q |
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| T |
9924 |
gcgtgaaaaggtccaaaaacggtaaaggtggctgctgataccgttttgtaa |
9974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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