View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21444_high_13 (Length: 350)
Name: NF21444_high_13
Description: NF21444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21444_high_13 |
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Alignment Details
Target: chr8 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 341
Target Start/End: Complemental strand, 11397616 - 11397265
Alignment:
| Q |
1 |
taggtagagaatcaaagaggaggtgacagccatacaaaatttggtaaaatgtactgagaaaattgatgacatgaattcaaattgtcaatgaagaattaat |
100 |
Q |
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| T |
11397616 |
taggtagagaatcaaagaggaggtgacagccatacaaaatttggtaaaatgtactgagaaaattgatgacatgaattcaaattgtcaatgaagaattaat |
11397517 |
T |
|
| Q |
101 |
gcaagaactaaattttttccaaagatcc-----------aatattaagtacttatgttgattgttatagatacaacttgcataaactatttttagaatgt |
189 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |
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| T |
11397516 |
gcaagaactaaattttttccaaagatcctgttactacctaatattaagtacttatgttgattgttatagatacaacttgcataaactattttcacaatgt |
11397417 |
T |
|
| Q |
190 |
tggtcacttactccccaagtgcatttcctttgttcctttgtttacttgcattacgtcactttgaacagaatccatgatcattgcaaacctgctcaatgag |
289 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11397416 |
tggtcacttactctccaagtgcatttcctttgttcctttgtttacttgcattacgtcactttgaacagaatccatgatcattgcaaacctgctcaatgag |
11397317 |
T |
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| Q |
290 |
gtttccattatgccaattctgttttcgagtccttcacttaactgatctgtgg |
341 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11397316 |
gtttccattatgccaattctgttttcgagtccttcacttaactgatctgtgg |
11397265 |
T |
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