View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21444_high_16 (Length: 339)
Name: NF21444_high_16
Description: NF21444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21444_high_16 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 327; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 9 - 339
Target Start/End: Complemental strand, 41555853 - 41555523
Alignment:
| Q |
9 |
agcagagagaaatcaatgattgggatggaagctgcaatctcatctgcaacatcaataatatcaccatgttctgtgagggagtggtaattggaaggaatga |
108 |
Q |
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| T |
41555853 |
agcagagagaaatcaatgattgggatggaagctgcaatctcatctgcaacatcaataatatcaccatgttctgtgagggagtggtaattggaaggaatga |
41555754 |
T |
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| Q |
109 |
gagaggttccatttgattccgcaaaggctttgatgcttgaaatatttgatgtatgaacctttgttggttctgatgatgaaattgtagtagctgaagccat |
208 |
Q |
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| T |
41555753 |
gagaggttccatttgattccgcaaaggctttgatgcttgaaatatttgatgtatgaacctttgttggttctgatgatgaaattgtagtagctgaagccat |
41555654 |
T |
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| Q |
209 |
gaatgtatctttgatgagttcttgagtggaattgatatatattgaatattgatgtaattaggaagcgattgcaatcacgtagaggattaggaagtgatga |
308 |
Q |
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| T |
41555653 |
ggatgtatctttgatgagttcttgagtggaattgatatatattgaatattgatgtaattaggaagcgattgcaatcacgtagaggattaggaagtgatga |
41555554 |
T |
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| Q |
309 |
gagtattgatgtaaatataaacagagtgtac |
339 |
Q |
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| T |
41555553 |
gagtattgatgtaaatataaacagagtgtac |
41555523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 12 - 106
Target Start/End: Complemental strand, 41560502 - 41560408
Alignment:
| Q |
12 |
agagagaaatcaatgattgggatggaagctgcaatctcatctgcaacatcaataatatcaccatgttctgtgagggagtggtaattggaaggaat |
106 |
Q |
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| T |
41560502 |
agagagaaatcaatgactgggatggaagctgcaagctcctctgtaacatcaacaatatcatcaggttctgcgagggagtggtaacttgaaggaat |
41560408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 131 - 222
Target Start/End: Complemental strand, 41560404 - 41560313
Alignment:
| Q |
131 |
aaaggctttgatgcttgaaatatttgatgtatgaacctttgttggttctgatgatgaaattgtagtagctgaagccatgaatgtatctttga |
222 |
Q |
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| T |
41560404 |
aaaggctttgatacttgaaatatttgatgcatcaacttttgtaggttctgatgatgaaatgaaaggagctgaagccatggatgtatatttga |
41560313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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