View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21444_high_18 (Length: 336)

Name: NF21444_high_18
Description: NF21444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21444_high_18
NF21444_high_18
[»] chr3 (5 HSPs)
chr3 (28-308)||(50806530-50806810)
chr3 (28-308)||(50869067-50869347)
chr3 (28-308)||(44196067-44196331)
chr3 (137-308)||(48553855-48554026)
chr3 (140-170)||(26599146-26599176)
[»] chr7 (4 HSPs)
chr7 (138-214)||(39362045-39362118)
chr7 (131-170)||(39591530-39591569)
chr7 (138-170)||(30456520-30456552)
chr7 (138-170)||(35536075-35536107)
[»] chr6 (1 HSPs)
chr6 (140-191)||(2732311-2732360)
[»] chr4 (1 HSPs)
chr4 (138-170)||(31038937-31038969)
[»] chr2 (1 HSPs)
chr2 (140-172)||(33944571-33944603)


Alignment Details
Target: chr3 (Bit Score: 281; Significance: 1e-157; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 28 - 308
Target Start/End: Complemental strand, 50806810 - 50806530
Alignment:
Q  28 taatctattaattcactttggttattgatggtatactaagtaatttacactcacaattctttgatgcataaaacagcaggtcactggagatccaaaccca 127  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50806810 taatctattaattcactttggttattgatggtatactaagtaatttacactcacaattctttgatgcataaaacagcaggtcactggagatccaaaccca 50806711  T
Q  128 atttcaaagcaacttatatgaaaactatttgactttattttatataaaaacagcttatacataagtgcttatgctataagtgcttaagttgtttatccaa 227  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50806710 atttcaaagcaacttatatgaaaactatttgactttattttatataaaaacagcttatacataagtgcttatgctataagtgcttaagttgtttatccaa 50806611  T
Q  228 atggaacctttatggtaaaatgccaatacctgccatgatatactcaggagcagcatagccatttgttcccatcatgcatgt 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50806610 atggaacctttatggtaaaatgccaatacctgccatgatatactcaggagcagcatagccatttgttcccatcatgcatgt 50806530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 28 - 308
Target Start/End: Original strand, 50869067 - 50869347
Alignment:
Q  28 taatctattaattcactttggttattgatggtatactaagtaatttacactcacaattctttgatgcataaaacagcaggtcactggagatccaaaccca 127  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50869067 taatctattaattcactttggttattgatggtatactaagtaatttacactcacaattctttgatgcataaaacagcaggtcactggagatccaaaccca 50869166  T
Q  128 atttcaaagcaacttatatgaaaactatttgactttattttatataaaaacagcttatacataagtgcttatgctataagtgcttaagttgtttatccaa 227  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50869167 atttcaaagcaacttatatgaaaactatttgactttattttatataaaaacagcttatacataagtgcttatgctataagtgcttaagttgtttatccaa 50869266  T
Q  228 atggaacctttatggtaaaatgccaatacctgccatgatatactcaggagcagcatagccatttgttcccatcatgcatgt 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50869267 atggaacctttatggtaaaatgccaatacctgccatgatatactcaggagcagcatagccatttgttcccatcatgcatgt 50869347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 28 - 308
Target Start/End: Original strand, 44196067 - 44196331
Alignment:
Q  28 taatctattaattcactttggttattgatggtatactaagtaatttacactcacaattctttgatgcataaaacagcaggtcactggagatccaaaccca 127  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  44196067 taatctattaattcactttggttattgatggtatactaagtaatttacactcacaattctttgatgcataaaactgcaggtcactggagatccaaaccca 44196166  T
Q  128 atttcaaagcaacttatatgaaaactatttgactttattttatataaaaacagcttatacataagtgcttatgctataagtgcttaagttgtttatccaa 227  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||                ||||||||||||||||    
T  44196167 atttcaaagcaacttatatgaaaactatttgactttattttaaataaaaacagcttatacataagcgc----------------taagttgtttatccaa 44196250  T
Q  228 atggaacctttatggtaaaatgccaatacctgccatgatatactcaggagcagcatagccatttgttcccatcatgcatgt 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||    
T  44196251 atggaacctttatggtaaaatgccaatacctgccatgatatactcaggagcagcatagccttttgttcccattatgcatgt 44196331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 137 - 308
Target Start/End: Complemental strand, 48554026 - 48553855
Alignment:
Q  137 caacttatatgaaaactatttgactttattttatataaaaacagcttatacataagtgcttatgctataagtgcttaagttgtttatccaaatggaacct 236  Q
    |||||| ||||||||| || ||||||||||||||||||||| |||||||||||||  ||||||||||||||||||||||||||| |||||||||||||||    
T  48554026 caacttttatgaaaacaatctgactttattttatataaaaatagcttatacataaacgcttatgctataagtgcttaagttgttaatccaaatggaacct 48553927  T
Q  237 ttatggtaaaatgccaatacctgccatgatatactcaggagcagcatagccatttgttcccatcatgcatgt 308  Q
     |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||    
T  48553926 atatggtaaaatgccaatacctgacatgatatactcaggagcagcatagccttttgttcccattatgcatgt 48553855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 170
Target Start/End: Complemental strand, 26599176 - 26599146
Alignment:
Q  140 cttatatgaaaactatttgactttattttat 170  Q
    |||||||||||||||||||||||||||||||    
T  26599176 cttatatgaaaactatttgactttattttat 26599146  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 138 - 214
Target Start/End: Complemental strand, 39362118 - 39362045
Alignment:
Q  138 aacttatatgaaaactatttgactttattttatataaaaacagcttatacataagtgcttatgctataagtgcttaa 214  Q
    |||||| |||||||| ||||||||||  ||   || |||| ||||||||||||||||||||||||||||||||||||    
T  39362118 aacttacatgaaaacaatttgacttttatt---atgaaaatagcttatacataagtgcttatgctataagtgcttaa 39362045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 131 - 170
Target Start/End: Original strand, 39591530 - 39591569
Alignment:
Q  131 tcaaagcaacttatatgaaaactatttgactttattttat 170  Q
    ||||| |||||||||||||||| |||||||||||||||||    
T  39591530 tcaaaacaacttatatgaaaacaatttgactttattttat 39591569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 138 - 170
Target Start/End: Original strand, 30456520 - 30456552
Alignment:
Q  138 aacttatatgaaaactatttgactttattttat 170  Q
    ||||||||||||||| |||||||||||||||||    
T  30456520 aacttatatgaaaacaatttgactttattttat 30456552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 138 - 170
Target Start/End: Complemental strand, 35536107 - 35536075
Alignment:
Q  138 aacttatatgaaaactatttgactttattttat 170  Q
    ||||||||||||||| |||||||||||||||||    
T  35536107 aacttatatgaaaacaatttgactttattttat 35536075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 140 - 191
Target Start/End: Original strand, 2732311 - 2732360
Alignment:
Q  140 cttatatgaaaactatttgactttattttatataaaaacagcttatacataa 191  Q
    ||||||||||||  ||||||||||||||  |||||||| |||||||||||||    
T  2732311 cttatatgaaaataatttgactttattt--tataaaaatagcttatacataa 2732360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 138 - 170
Target Start/End: Original strand, 31038937 - 31038969
Alignment:
Q  138 aacttatatgaaaactatttgactttattttat 170  Q
    ||||||||||||||| |||||||||||||||||    
T  31038937 aacttatatgaaaacaatttgactttattttat 31038969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 140 - 172
Target Start/End: Complemental strand, 33944603 - 33944571
Alignment:
Q  140 cttatatgaaaactatttgactttattttatat 172  Q
    ||||||||||||| |||||||||||||||||||    
T  33944603 cttatatgaaaacaatttgactttattttatat 33944571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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