View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21444_high_19 (Length: 335)
Name: NF21444_high_19
Description: NF21444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21444_high_19 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 2 - 332
Target Start/End: Original strand, 16961393 - 16961723
Alignment:
| Q |
2 |
agtactagtgattgaagattgttaagatgtgaaagctgagatggtatttctccactaaagtaatttgagctaatgttaagtatttctagtgaagataatt |
101 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16961393 |
agtactaatgattgaagattgttaagatgtgaaagttgagatggtatttctccactaaagtaatttgagctaatgttaagtatttctagtgaagataatt |
16961492 |
T |
|
| Q |
102 |
gagctattgtttcaggtagtggcccccataaaccaagagaaaccaaagagagtactttcaagcttgataaagtggaaagtgttgaaaagagtgtgtatga |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16961493 |
gagctattgtttcaggtagtggcccccataaaccaagtgaaaccaaagagagtactttcaagcttgataaagtggaaagtgttgaaaagagtgtgtatga |
16961592 |
T |
|
| Q |
202 |
gttgaaattttgaggcaatgaagtaaactcattgttgtttccaacaacatgcaactgtgtaacattttcttcatagcacactagtgttaaatatggagta |
301 |
Q |
| |
|
||||||||||||||||||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16961593 |
gttgaaattttgaggcaatgaggtgaactcattggtgtttccaacaacatgcaactgtgtaacattttcttcatagcacactagtgttaaatatggagta |
16961692 |
T |
|
| Q |
302 |
ggttcaatgttgcagaaatctgtggtgctgc |
332 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
16961693 |
ggttcaatgttgcagaaatctgtggtgctgc |
16961723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University