View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21444_high_2 (Length: 702)
Name: NF21444_high_2
Description: NF21444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21444_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 305; Significance: 1e-171; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 29 - 349
Target Start/End: Complemental strand, 33966725 - 33966405
Alignment:
| Q |
29 |
aatcagcaaattgttgaagcattagggagtgattatattcggatccacacttcttgtgaatgaagacatggcgcacccacaaattctccataagaaaatc |
128 |
Q |
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| T |
33966725 |
aatcagcaaattgttgaagcattagggagtgactatattcggatccacacttcttgtgaatgaagacatggcgcacccacaaattctccataagaaaatc |
33966626 |
T |
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| Q |
129 |
aaccccttttttaaacactctgatcgagataggaagattagaatagtccatctcaaacgatgaattaaccttcaaaataaaaatacaaaaattgttattc |
228 |
Q |
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| T |
33966625 |
aaccccttttttaaacactctgatcgagataggaagattagaatagtccatctcaaacgatgaattagccttcaaaataaaaatacaaaaattgttattc |
33966526 |
T |
|
| Q |
229 |
ccacgaaaggggacacagagtaagttaagttcgattatataataaaacagtaacctgttcttgtttctgcattagaagacagctagtattggctttgtgg |
328 |
Q |
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| T |
33966525 |
ccacgaaaggggacacagagtaagttaagttcgactatataataaaacagtaacctgttcttgtttctgcattagaagacagctagtattggcttcgtgg |
33966426 |
T |
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| Q |
329 |
ataatctcaacagagggggtt |
349 |
Q |
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| T |
33966425 |
ataatctcaacagagggggtt |
33966405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 478 - 687
Target Start/End: Complemental strand, 33966193 - 33965984
Alignment:
| Q |
478 |
ttagacgacgagaattggcttccttgataatctgaatagagctaaaatcaccttctaagcattcttggtacatagccactagttgatcacaaacctacaa |
577 |
Q |
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| T |
33966193 |
ttagacgacgagaattggcttccttgataatctgaatagagctaaaatcaccttctaagcattcttggtacatagccactagttgatcacaaacctacaa |
33966094 |
T |
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| Q |
578 |
agatagatacatacttaaaagtgaagattgatgaataaaaaatgataattaaagcaatagaaatagtaaaagaaatgacctcttcagtgctgttatcaag |
677 |
Q |
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| T |
33966093 |
agatagatacatgcttaaaagtgaagattgatgaataaaaaatgataattaaagcaatagaaatagtaaaagaaatgacctcttcagtgctgttatcaag |
33965994 |
T |
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| Q |
678 |
atgatgtcca |
687 |
Q |
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| T |
33965993 |
aggatgtcca |
33965984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 394 - 480
Target Start/End: Complemental strand, 33966428 - 33966342
Alignment:
| Q |
394 |
tggattatctcagcagagggggtttcctccttctgtgttagaaggcgagtttggctaagattagctttcttgattttctttttctta |
480 |
Q |
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| T |
33966428 |
tggataatctcaacagagggggtttcctccttctgtgttagaaggcgagtttggctaagattagctttcttgattttctttttctta |
33966342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 31 - 227
Target Start/End: Original strand, 33432763 - 33432953
Alignment:
| Q |
31 |
tcagcaaattgttgaagcattagggagtgattatattcggatccacacttcttgtgaatgaagacatggcgcacccacaaattctccataagaaaatcaa |
130 |
Q |
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||||||| ||||||||||||||||||| ||||| || ||||| || ||||||||||||||||| ||||||||||||| ||||||||| ||| ||| |
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| T |
33432763 |
tcagcaagttgttgaagcattagggagggatta------gagccacatttgttgtgaatgaagacatgacgcacccacaaatcctccataagcaaaccaa |
33432856 |
T |
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| Q |
131 |
ccccttttttaaacactctgatcgagataggaagattagaatagtccatctcaaacgatgaattaaccttcaaaataaaaatacaaaaattgttatt |
227 |
Q |
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| T |
33432857 |
ccccttcttcaaaaactctgattgagttagtaagattagaacaatcaatctcggatgaagaattagccttcaaattaaatatacaaaaactgttatt |
33432953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 494 - 578
Target Start/End: Original strand, 33433347 - 33433431
Alignment:
| Q |
494 |
ggcttccttgataatctgaatagagctaaaatcaccttctaagcattcttggtacatagccactagttgatcacaaacctacaaa |
578 |
Q |
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||||||||||| |||||||| ||||||||||||| || |||||||||||||||||||| |||||||||||||| ||||||||| |
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| T |
33433347 |
ggcttccttgagaatctgaacagagctaaaatcatgttgtaagcattcttggtacatagagactagttgatcacacacctacaaa |
33433431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 29 - 94
Target Start/End: Complemental strand, 33970437 - 33970372
Alignment:
| Q |
29 |
aatcagcaaattgttgaagcattagggagtgattatattcggatccacacttcttgtgaatgaaga |
94 |
Q |
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| T |
33970437 |
aatcagcaaattgttgaagcattttggagtaattatattcagagccacacttcttgtgaatgaaga |
33970372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 515 - 576
Target Start/End: Complemental strand, 33112070 - 33112009
Alignment:
| Q |
515 |
agagctaaaatcaccttctaagcattcttggtacatagccactagttgatcacaaacctaca |
576 |
Q |
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|||||||||||| |||| ||||||||||| |||||| ||| |||||| ||||||||||||| |
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| T |
33112070 |
agagctaaaatctccttgtaagcattcttcgtacattaccaatagttgttcacaaacctaca |
33112009 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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