View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21444_high_20 (Length: 334)
Name: NF21444_high_20
Description: NF21444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21444_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 23 - 309
Target Start/End: Complemental strand, 46836962 - 46836676
Alignment:
| Q |
23 |
catcatcatcttcatcttcatcaggcaagccttgttgacattcaacgggatagaaactgtgcctgattttattaataggtatcatttttgtcccaccaag |
122 |
Q |
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| T |
46836962 |
catcatcatcttcatcttcatcaggcaagccttgttgacattcaacgggatagaaactgtgcctgattttattaataggtaccatttttgtcccaccaag |
46836863 |
T |
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| Q |
123 |
atatagttttctatgactgtggttagaaaccaagctgaaaactagattggaaattctagactgaggttgtttgtttaagtacagatctaatctgacactt |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46836862 |
atatagttttctatgactgtggttagaaaccaagctgaaaactagattggaaattctagactgaggttgtttgtttaagtacagatctaatctgacactt |
46836763 |
T |
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| Q |
223 |
agaaaggactttgtatgcagaatattctgctgctgaatgacaactagtgacataccttgtatggttgataatcaagaatttattgat |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46836762 |
agaaaggactttgtatgcagaatattctgctgctgaatgacaactagtgacataccttgtatggttgataatcaagaatttattgat |
46836676 |
T |
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