View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21444_high_21 (Length: 332)
Name: NF21444_high_21
Description: NF21444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21444_high_21 |
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Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 6 - 299
Target Start/End: Complemental strand, 46039332 - 46039041
Alignment:
| Q |
6 |
cagcaccacagagacaatacagtgatctagcagaagctaatgatgccccaatatagatgttttagtctatcaatgaggtgtcagtttagtggtaagaatt |
105 |
Q |
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| T |
46039332 |
cagcactacagagacaatacagtgatctagcagaagctaatgatgccccaatatagatgttgtagtctatcaatgaggtgtcagtttagtggtaagaatt |
46039233 |
T |
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| Q |
106 |
tgatcttttatcctcaagagatattcaaacctcctagggaacactagtaaaatagtcattaatgtcgctttaattaatgatagaatcttaattttannnn |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| ||||| | |
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| T |
46039232 |
tgatcttttatcctcaagagatattcaaacctcctagggaacactggtaaaatagtcattaatgtcgctttaattaacgatagaatctgaatttga-ttt |
46039134 |
T |
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| Q |
206 |
nnnncaattcttcttgagattagttatatgctttaaatagtgaggatgtttttatatacaaacttttagcatgtcagcatttgcatgtgtctat |
299 |
Q |
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|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46039133 |
ttttcaattcttcttgagattaagt-tatgctttaaatagtgaggatgtttttatatacaaacttttagcatgtcagcatttgcatgtgtctat |
46039041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 299 - 331
Target Start/End: Complemental strand, 46039019 - 46038987
Alignment:
| Q |
299 |
tatagatgattgtatcttgatttcaatggatat |
331 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
46039019 |
tatagatgattgtatcttgatttcaatggatat |
46038987 |
T |
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